PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G23520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WOX | ||||||||
Protein Properties | Length: 239aa MW: 25174.4 Da PI: 9.4808 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.9 | 4.8e-15 | 21 | 81 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+t+++eq+ +Le+ F++ +p ++e ++ k l + ++ V++WFqNrR + ++ LPERR07G23520.1 21 KSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDASVFYWFQNRRSRSRR 81 79*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 102.5 | 2.9e-33 | 20 | 82 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+ VfyWFQNr++R+r++ LPERR07G23520.1 20 VKSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDASVFYWFQNRRSRSRRR 82 589**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.11 | 17 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-5 | 19 | 86 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.2E-13 | 19 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-7 | 21 | 87 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.2E-13 | 21 | 81 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDGGGGQSPK RHGAAVAEPV KSRWTPKPEQ ILILESIFNS GMVNPPKDET VRIRKLLERF 60 GAVGDASVFY WFQNRRSRSR RRRRQLQAAA AAVPCGHGGG GSAAASTGIM FGHHGGAAGG 120 YSSSPSPLSA DCGGGDDLFA ISRQMMGYSM DGGGSSAAAA AAGQQQQQMY YSCQPATITV 180 FINGVATEVP RGPIDLRSMF GQDVMLVHST GSLLPANEHG ILLHSLQMGE SYFLVSRSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G23520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645719.1 | 2e-87 | WUSCHEL-related homeobox 11 | ||||
Swissprot | B8B644 | 1e-88 | WOX11_ORYSI; WUSCHEL-related homeobox 11 | ||||
Swissprot | Q0D3I7 | 1e-88 | WOX11_ORYSJ; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A0D9X318 | 1e-174 | A0A0D9X318_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G23520.1 | 1e-175 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 6e-35 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
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