PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G23500.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WOX
Protein Properties Length: 195aa    MW: 20194.6 Da    PI: 10.3015
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G23500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.11.2e-122080257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     r+R+t+++eq  +Le  F++   +p + e  ++ k l     + ++++++WF NrR + ++
  LPERR07G23500.1 20 RSRWTPNPEQRLILEFIFNSgMVNPPKGETVRIRKLLerfgAVGDANIFYWFRNRRSRSRR 80
                     89*****************99*************************************997 PP
2Wus_type_Homeobox91.39.4e-301982265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtP+peQ  iLe +++sG+++P+k e+ ri++ Le++G+++d+N+fyWF Nr++R+r++q
    LPERR07G23500.1 19 VRSRWTPNPEQRLILEFIFNSGMVNPPKGETVRIRKLLERFGAVGDANIFYWFRNRRSRSRRRQ 82
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.99E-111687IPR009057Homeodomain-like
PROSITE profilePS500719.8471681IPR001356Homeobox domain
SMARTSM003890.00251885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-62088IPR009057Homeodomain-like
PfamPF000462.2E-102080IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDGGGGQSPD RHAAGRPPVR SRWTPNPEQR LILEFIFNSG MVNPPKGETV RIRKLLERFG  60
AVGDANIFYW FRNRRSRSRR RQAQAQATAA AAAASSGSPP AAAAPGGSAA ALLGMMFGGA  120
GGYTSPPSVG MMMGDVDCGG GGGDDDLFAI ARQMGYRSMD GGGGGGSSSS AAAVAGQQQH  180
QMYHWCQPGE ARPPP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}.
UniProtTranscription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G23500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635032e-64AK063503.1 Oryza sativa Japonica Group cDNA clone:001-116-E11, full insert sequence.
GenBankAK0732322e-64AK073232.1 Oryza sativa Japonica Group cDNA clone:J033021B15, full insert sequence.
GenBankAP0051672e-64AP005167.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17.
GenBankAP0149632e-64AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-64CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181990.11e-41WUSCHEL-related homeobox 11-like
SwissprotB8B6447e-42WOX11_ORYSI; WUSCHEL-related homeobox 11
SwissprotQ0D3I77e-42WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBLA0A0D9X3161e-136A0A0D9X316_9ORYZ; Uncharacterized protein
STRINGLPERR07G23500.11e-137(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-29WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
    Plant Cell, 2015. 27(9): p. 2469-83
    [PMID:26307379]
  3. Zhang T, et al.
    The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.
    Front Plant Sci, 2018. 9: p. 523
    [PMID:29740464]