PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G23420.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 366aa MW: 38970.1 Da PI: 6.904

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G23420.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.3	9.2e-51	14	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+v+yL ++ g+ l++ +i++vdiyk++Pw+Lp+++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+ LPERR07G23420.1 14 LPPGFRFHPTDEELIVHYLSSRAGGDGgggLPV-AIIADVDIYKFDPWQLPAQAVYGESEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKP 106 79*******************9998888888.78***********76667899******************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +g vg+kk Lvfy+gr pkg+kt W+mheyrl LPERR07G23420.1 107 IHNSvTGDIVGVKKALVFYRGRPPKGTKTAWIMHEYRL 144 9988999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-60	3	191	IPR003441	NAC domain
PROSITE profile	PS51005	59.405	14	191	IPR003441	NAC domain
Pfam	PF02365	2.1E-26	15	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MEMMSSSSAT ATALPPGFRF HPTDEELIVH YLSSRAGGDG GGGLPVAIIA DVDIYKFDPW 60 QLPAQAVYGE SEWYFFSPRD RKYPNGIRPN RAAGSGYWKA TGTDKPIHNS VTGDIVGVKK 120 ALVFYRGRPP KGTKTAWIMH EYRLASASAA GDPLAAVYKP AAAASSSSSS CRFRNVSMRL 180 DDWVLCRIYK KSGQSEPSTI LPPLAVAGDY DHDEQSAACL VDDTYSFFAP PPPPASSTFF 240 PKLPKIPSIS ELFDEHALAQ IFDAAEPPLP PPATDHLAVV HPSLNHLLAV GDNLLAECYS 300 TTASSPAIAG GIKRKASPGE FAGGGGGGHT PAKRMMNGSC FESPQLLATP ASVLAGLNHQ 360 ILPQLF

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MEMMSSSSAT ATALPPGFRF HPTDEELIVH YLSSRAGGDG GGGLPVAIIA DVDIYKFDPW  60
QLPAQAVYGE SEWYFFSPRD RKYPNGIRPN RAAGSGYWKA TGTDKPIHNS VTGDIVGVKK  120
ALVFYRGRPP KGTKTAWIMH EYRLASASAA GDPLAAVYKP AAAASSSSSS CRFRNVSMRL  180
DDWVLCRIYK KSGQSEPSTI LPPLAVAGDY DHDEQSAACL VDDTYSFFAP PPPPASSTFF  240
PKLPKIPSIS ELFDEHALAQ IFDAAEPPLP PPATDHLAVV HPSLNHLLAV GDNLLAECYS  300
TTASSPAIAG GIKRKASPGE FAGGGGGGHT PAKRMMNGSC FESPQLLATP ASVLAGLNHQ  360
ILPQLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-69	1	196	4	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-69	1	196	4	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-69	1	196	4	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-69	1	196	4	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-69	1	196	7	173	NAC domain-containing protein 19
3swm_B	2e-69	1	196	7	173	NAC domain-containing protein 19
3swm_C	2e-69	1	196	7	173	NAC domain-containing protein 19
3swm_D	2e-69	1	196	7	173	NAC domain-containing protein 19
3swp_A	2e-69	1	196	7	173	NAC domain-containing protein 19
3swp_B	2e-69	1	196	7	173	NAC domain-containing protein 19
3swp_C	2e-69	1	196	7	173	NAC domain-containing protein 19
3swp_D	2e-69	1	196	7	173	NAC domain-containing protein 19
4dul_A	2e-69	1	196	4	170	NAC domain-containing protein 19
4dul_B	2e-69	1	196	4	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G23420.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647490.1	1e-166	NAC transcription factor 29
Swissprot	Q8H4S4	1e-77	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	A0A0D9X307	0.0	A0A0D9X307_9ORYZ; Uncharacterized protein
STRING	LPERR07G23420.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-73	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]