PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G23280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 2017aa    MW: 223373 Da    PI: 7.0265
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G23280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.81.9e-2217981859259
                       --SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY    2 dDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                       +Dg +WrKYGqK++++s+ +prsYYrCt++   gC+++k+v+ s+++p  ++i Y geH+++
  LPERR07G23280.1 1798 EDGNQWRKYGQKHIQDSPnNPRSYYRCTHRpdqGCMATKQVQISETNPLEFVISYYGEHTCR 1859
                       8***************9736*********9999**************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525409.46E-41267300IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM004872.0E-22280664IPR014001Helicase superfamily 1/2, ATP-binding domain
Gene3DG3DSA:3.40.50.3009.7E-19283301IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF001767.6E-90287788IPR000330SNF2-related, N-terminal domain
Gene3DG3DSA:3.40.50.3009.7E-19349376IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525409.46E-41350385IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF579032.88E-8395441IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.2E-10397438IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002496.9E-8404488IPR001965Zinc finger, PHD-type
PROSITE profilePS5119212.578463656IPR014001Helicase superfamily 1/2, ATP-binding domain
Gene3DG3DSA:3.30.40.105.2E-10473492IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:3.40.50.3009.7E-19498657IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525409.46E-41500693IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000464.36E-5503638No hitNo description
SuperFamilySSF525409.69E-33600640IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF578501.71E-713541413No hitNo description
Gene3DG3DSA:3.30.40.101.7E-713571416IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5008910.57113591408IPR001841Zinc finger, RING-type
SMARTSM001847.7E-413591407IPR001841Zinc finger, RING-type
CDDcd001621.68E-513591409No hitNo description
Gene3DG3DSA:3.40.50.3001.9E-514291593IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525409.69E-3314381602IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000791.31E-614481582No hitNo description
PROSITE profilePS5119410.08614511627IPR001650Helicase, C-terminal
PfamPF002717.5E-514561575IPR001650Helicase, C-terminal
SMARTSM004906.4E-514791575IPR001650Helicase, C-terminal
Gene3DG3DSA:2.20.25.802.1E-2317831861IPR003657WRKY domain
SuperFamilySSF1182901.02E-2117901861IPR003657WRKY domain
PROSITE profilePS5081120.02517921861IPR003657WRKY domain
SMARTSM007741.9E-3317971860IPR003657WRKY domain
PfamPF031068.3E-2217981859IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 2017 aa     Download sequence    Send to blast
MGRKKSRPVR AGALGAVVSA EAEPDAPSPS GGGGGGGGGG SKSTRREARR RDVCVEVDGS  60
TWCLGDGDRR DLAELVMRDV RVSGEGLDVA ALREADREKR YSLRLRVRDA PEEGFRLGNW  120
PVVPSDCVIL ECAIAGVVVS GCFDGPDEGV SGLAHLVSLR FVTLRVHDFS VSHSGDSVLA  180
GSFRVRLGMM EQAFAACESL LEVTRHPWRK SLMNMMAWVR PEVLTSAAIY GEADLVCPIN  240
GGANGDFTPK KDSQFDLDAF YEAVKPSMEA GQLEEELPGL LPHLRPYQLR AANWMVQREK  300
RNTMVSSPNQ QYAHSAPYCV PIDYMHNNSR MFYNLFNGNV SMHPEPSPSY VSGGILADEM  360
GLGKTVELLA CIFAHRRPYS ADCSVSSNIK GTDQIKRHKR ERVECICGAA SVSSAYQGIW  420
IQCDICDAWQ HATCVGYSTK EDLRFNDDNG DAASKNEKGT IKSKNRRKKK DKYCTAETEE  480
KYICTLCSEL IEAAQTNISS HATLIVCPSP ILAQWHSEIT RHTRPGSLKV CIYEGAKNLD  540
LTSTPKNDMA EISTADIVLT TYDVLKEDLS HDSDRYDGDR RFLRYQKRYP VTPTVLTRVH  600
WWRLCLDEAQ MVESSKNSVT EMAMRLNAQH RWCITGTPIQ RRLDDLFGLL RFLRTSPFDT  660
YRWWVDIIRD PYEKGDMIAM NYTHKFFKEI MWRSSKIHVS RELQLPPQEE CFSWLIFSSI  720
EEYFYQKQHA TCMDRAHEII RRIRNDANKR ETISDSNVLS NVFLSNDDIA KLLVPLLKLR  780
QACCHPQVGS SGLCSLQRSP LSMGEILQVL IGKAKIEGEE ELRKTVVALN GLAGLAVIEH  840
KNQEAISLYK EVLALTRENF DDFRVDPLLN LHINHNLAEL LRASSDYLQE CQLKEQTFEV  900
HGGRKRKETS PVDSDLCGIK RNKICENSRS SLNADNPETS EDDKNINTQV CTCGEIDSDN  960
AGCQSSSVCL ADGCLRKTCN SIREKYLLVF TSKLLTAQED FSTSFTEVST LSTELQSQNM  1020
NWWLHALDCI EQNKDSADEL IRKINASLTK SNTGLGSEGI SSRVRTIAGL KYTIQAGIDS  1080
LQSSRQQLMH RLLELDKTMD NPKDEDIECQ RYCPNCYDGT GSLCIQCELD LLFQGYEARL  1140
FVVKKSNNGS VIASVDEARD LRRRNNELNQ FFRNTNTNEG SEPYDGDKNP RSVQENIQVY  1200
RHPSPIETSL GVIRTHSKTI MGEQHAKMAK KHLLLFEAMR KEFSHARNLS IAQTQLLRAH  1260
DEIKMSLSRL QLKENDDEPS AVNIVTREEL IPYNVQFTSD KFLSLSSLAR IRGQLRYLEG  1320
LALCNGHGES LPKTNNSVSV GTSFPATGQT ASDIGNEPCP ICQEKVFDQK MVFQCGHFLC  1380
CKCCLHMTEK SAGHFGGSKR WIMCPTCRQR TYLENVAFVV ENPSENADRE VDDLAESTIS  1440
VQGSYGTKIE AVTRRILRIT TTDGATKVLV FSSWNDVLDV LEHSLAANNI SYVRMKGGRK  1500
SHAALSQFKG LASSISGEKA KKPFSNMQPA QVLLMLIQHG ANGLNLLEAQ HVILMEPLLN  1560
PAAEAQAISR IHRIGQDKCT FVHRFIVKNT IEESIYKLNR GRAVCSTIHR KSKKFKDELV  1620
LTLKDVESLF PVAAHDQPSE QENKNHGGHL RSLPPSVAAG LAAERSMASP GGVEDGRRSQ  1680
ATVTPCELID GLLEMREKAV MLQNMVQVTP APSSCAVAST SRQLNQLLDG VVSRLQSSTL  1740
SVISPPIAGG RRGSGGSSSR KKRSAAVAGD SGPHRRSSSG RRRSKSPFVK MVTTKELEDG  1800
NQWRKYGQKH IQDSPNNPRS YYRCTHRPDQ GCMATKQVQI SETNPLEFVI SYYGEHTCRD  1860
PSTIPFLIEA EAPTANDNCY GNNRMINFGS GAAAAAVAST SSRQLMVAAD LGAVDPTPSC  1920
SFAATNCRSP FSPEYCGSED ADQLSSSLPL AAVVGMGSPS TSIVGSAPAE YEWPAGVVSG  1980
DLAGGGIDSF SSSPICSLGF FGNLPGDDGD MADPLWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-1817921859369OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12940SGGGGGGGGGGS
2465470RRKKKD
3466471RKKKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G23280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0701640.0AK070164.1 Oryza sativa Japonica Group cDNA clone:J023043E07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646867.10.0E3 ubiquitin-protein ligase SHPRH isoform X1
TrEMBLA0A0D9X2Z00.0A0A0D9X2Z0_9ORYZ; Uncharacterized protein
STRINGLPERR07G23280.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.15e-20WRKY DNA-binding protein 46