PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G18840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NF-YA | ||||||||
Protein Properties | Length: 254aa MW: 27872.6 Da PI: 9.0213 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.8 | 7.3e-33 | 102 | 158 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Ra+le+++kl k+rkpylheSRh+hA++R+RgsgGrF LPERR07G18840.1 102 EEPIFVNAKQYHAILRRRQMRARLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 158 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.7E-37 | 100 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.665 | 101 | 161 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.6E-27 | 103 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.4E-24 | 104 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 4.4E-24 | 135 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKQLGHKMHD QDSSSSDSSQ SHQEESTMND GSPNELHAST QSDNDDGHQK QDQDNIKPVS 60 SEGSPGASFP PPKLDYSQSF VYPQQNGTTN SRVPLPVEPA AEEPIFVNAK QYHAILRRRQ 120 MRARLEAQNK LVKGRKPYLH ESRHRHAMKR ARGSGGRFLN TKQLEEQKQQ QEEEASGGAS 180 GTKAPGNSNT VCAPSAFAPS ETASVSTSRE MPGNHEQNHF PSAGFLPTMS FRAQNGGDGK 240 LVASAIHQRV SMMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-22 | 102 | 163 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 151 | RHRHAMKRAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G18840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288033 | 1e-156 | AB288033.1 Oryza sativa Japonica Group OsHAP2G mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK101684 | 1e-156 | AK101684.1 Oryza sativa Japonica Group cDNA clone:J033058N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646559.1 | 1e-125 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646560.1 | 1e-125 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646561.1 | 1e-125 | nuclear transcription factor Y subunit A-4 | ||||
Refseq | XP_015646562.1 | 1e-125 | nuclear transcription factor Y subunit A-4 | ||||
Swissprot | Q9SYH4 | 7e-39 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | A0A0D9X1C2 | 0.0 | A0A0D9X1C2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G18840.2 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 7e-31 | nuclear factor Y, subunit A5 |