PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G17720.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HRT-like

Protein Properties

Length: 608aa MW: 66407.2 Da PI: 9.978

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G17720.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.5	4.7e-18	302	331	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGv+ledGs C ++Pv+gRKRCe HKG+R LPERR07G17720.1 302 VCGVMLEDGSSCLQPPVRGRKRCELHKGRR 331 7****************************9 PP
2	HRT-like	50.5	3.5e-16	570	599	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG++ dGs+Ck+qPv g+KRC+ HKG+R LPERR07G17720.1 570 ICGARALDGSPCKNQPVAGKKRCALHKGQR 599 8****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00465	1.3E-4	75	181	IPR000305	GIY-YIG nuclease superfamily

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MPAASASAAV SARLKREDYP RTKHDSLFSP WKVLVGPSDW EDHAAGKEGV QRYRVLNLPE 60 NFPGLYELGV ARDSDEGLRA RRNGSGGVVV VYLGQADNVR ARLQQYGRTG SHLDGGNSLS 120 SAGKAETKLQ ATVPGLFREV FARGYSLVFR CALMGNKQEA EKTETQLLRV FDYAWNKLQN 180 GACRREEILI KLEQAAGSHR SSLLGRVRQF KQEMFREKAG IKISRNGSVE ISSGIMKNLL 240 PRIRTFVGFR PQLVNSGDNV DNTFDSNSCG NKQARRRSEG YKVKKVDVIK RKSAPKRDSN 300 TVCGVMLEDG SSCLQPPVRG RKRCELHKGR RLGRITANLK GSSNNPFQVE ISIVESIPLT 360 ENGGKSNQAL KMEVTPAAMK ESSRARNSFE ANDMKTREAP IEDGTHETSG IVHICEAKSD 420 NSACTSKLVL GSEKCALCNG CKSEQFVPSQ GNGLLKNEEK IRIMTGNKLC GGETSHAKDD 480 QSLENQPSGR MWFEMLKAQN STSALSSNGR GCQRRVADVG VATICVALTD NGYHKTIPMA 540 GRERCNEHEG IKVTDASSVP FSGSSGWPSI CGARALDGSP CKNQPVAGKK RCALHKGQRA 600 CRTPQSIE

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MPAASASAAV SARLKREDYP RTKHDSLFSP WKVLVGPSDW EDHAAGKEGV QRYRVLNLPE  60
NFPGLYELGV ARDSDEGLRA RRNGSGGVVV VYLGQADNVR ARLQQYGRTG SHLDGGNSLS  120
SAGKAETKLQ ATVPGLFREV FARGYSLVFR CALMGNKQEA EKTETQLLRV FDYAWNKLQN  180
GACRREEILI KLEQAAGSHR SSLLGRVRQF KQEMFREKAG IKISRNGSVE ISSGIMKNLL  240
PRIRTFVGFR PQLVNSGDNV DNTFDSNSCG NKQARRRSEG YKVKKVDVIK RKSAPKRDSN  300
TVCGVMLEDG SSCLQPPVRG RKRCELHKGR RLGRITANLK GSSNNPFQVE ISIVESIPLT  360
ENGGKSNQAL KMEVTPAAMK ESSRARNSFE ANDMKTREAP IEDGTHETSG IVHICEAKSD  420
NSACTSKLVL GSEKCALCNG CKSEQFVPSQ GNGLLKNEEK IRIMTGNKLC GGETSHAKDD  480
QSLENQPSGR MWFEMLKAQN STSALSSNGR GCQRRVADVG VATICVALTD NGYHKTIPMA  540
GRERCNEHEG IKVTDASSVP FSGSSGWPSI CGARALDGSP CKNQPVAGKK RCALHKGQRA  600
CRTPQSIE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G17720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015694489.1	0.0	PREDICTED: uncharacterized protein LOC102711820
TrEMBL	A0A0D9X0Y5	0.0	A0A0D9X0Y5_9ORYZ; Uncharacterized protein
STRING	LPERR07G17720.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-66	effector of transcription2