PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G17470.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 613aa    MW: 65878.3 Da    PI: 6.4221
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G17470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32232289260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkk +ers  d++++e++Y+g+Hnh+k
  LPERR07G17470.1 232 EDGYNWRKYGQKHVKGSENPRSYYKCTHPNCEVKKLLERSL-DGQITEVVYKGRHNHPK 289
                      8****************************************.***************85 PP
2WRKY106.41.5e-33405463159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++dpk v++tYeg+Hnhe
  LPERR07G17470.1 405 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNTGCPVRKHVERASHDPKSVITTYEGKHNHE 463
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-28225290IPR003657WRKY domain
PROSITE profilePS5081123.801226290IPR003657WRKY domain
SuperFamilySSF1182908.24E-25230290IPR003657WRKY domain
SMARTSM007743.6E-35231289IPR003657WRKY domain
PfamPF031062.1E-24232288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-37390465IPR003657WRKY domain
SuperFamilySSF1182901.44E-29397465IPR003657WRKY domain
PROSITE profilePS5081138.526400465IPR003657WRKY domain
SMARTSM007741.7E-39405464IPR003657WRKY domain
PfamPF031062.4E-26406463IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MADSPNPSSG DRPAGVGGSP EMQPLPDRRI AALAAAGAGA RYKAMSPARL PISREPCLTI  60
PPGFSPSALL GSPALLESPV LLNNFKVEPS PTTGTLSMAA IMSKSTNSDI LPSPRDKSAN  120
SVHEDGASRD FEFKPHAPAI NDPPKHEPYM QNGSLNNAPS SNDMMIDNKP LCSRESTVTV  180
NVSSAPNQPF GMAGLTDSVP AELGTSELHQ MNSSGNAMQE TQPESVAEKS AEDGYNWRKY  240
GQKHVKGSEN PRSYYKCTHP NCEVKKLLER SLDGQITEVV YKGRHNHPKP QPNRRLSAGA  300
VPPSQGEERY DGVATTEDKS SNALSNLGNA VHSASMVEPV PGSASDDDVD AGGGRPYPGD  360
DATEDDDLES KRRKMESAAI DAALMGKPNR EPRVVVQTVS EVDILDDGYR WRKYGQKVVK  420
GNPNPRSYYK CTNTGCPVRK HVERASHDPK SVITTYEGKH NHEVPASRNA SHEMSTPPMK  480
PVHPINSNMP SLGGMMRACE ARNFPNQYSQ AAESDTISLD LGVGISPNHS DATNQLQSSV  540
PDQMQYQMQP MASIYSNMGH PAMQVPTMPG NAASSMYGSR EEKPSEGFTF KATPMDHSAN  600
LCYSAAGNLV MGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37232466878Probable WRKY transcription factor 4
2lex_A8e-37232466878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G17470.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0705370.0AK070537.1 Oryza sativa Japonica Group cDNA clone:J023062H03, full insert sequence.
GenBankAY3418500.0AY341850.1 Oryza sativa (japonica cultivar-group) WRKY9 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646742.10.0WRKY transcription factor SUSIBA2 isoform X1
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A0D9X0V10.0A0A0D9X0V1_9ORYZ; Uncharacterized protein
STRINGLPERR07G17470.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67403851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-118WRKY family protein