PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G16630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | YABBY | ||||||||
Protein Properties | Length: 150aa MW: 16083.2 Da PI: 6.4872 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 51.4 | 4.3e-16 | 12 | 56 | 7 | 50 |
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtslls.vnl 50 e++ yvqC+fC t+l+vsvP +s+++vv+v+CG C+ +ls vnl LPERR07G16630.1 12 RERLGYVQCSFCATVLLVSVPCSSVLRVVAVQCGRCSGILSaVNL 56 6899************************************93444 PP | |||||||
2 | YABBY | 97.5 | 3.1e-30 | 87 | 150 | 103 | 166 |
YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 + d++vp + +++PP ++qr Psayn+f+keei+rik P+i+h++afs+aaknWah+P+i LPERR07G16630.1 87 GDADDDVPPAAVANKPPGRKQRTPSAYNCFVKEEIKRIKGMEPNITHKQAFSTAAKNWAHLPRI 150 4677889988999*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.0E-41 | 12 | 150 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.4E-7 | 99 | 148 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 9.7E-5 | 101 | 148 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MSSVRDACSG VRERLGYVQC SFCATVLLVS VPCSSVLRVV AVQCGRCSGI LSAVNLPPPP 60 VVSASELDVD PPPREYSDES SEDSEGGDAD DDVPPAAVAN KPPGRKQRTP SAYNCFVKEE 120 IKRIKGMEPN ITHKQAFSTA AKNWAHLPRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G16630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274019 | 1e-107 | AB274019.1 Oryza sativa Japonica Group OsYABBY7 mRNA for OsYABBY7 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657866.1 | 3e-75 | PREDICTED: protein YABBY 7-like | ||||
Swissprot | A2PZN8 | 5e-71 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A0A0D9X0J4 | 1e-105 | A0A0D9X0J4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G16630.1 | 1e-106 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-23 | YABBY family protein |