PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G11250.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 271aa    MW: 28790.3 Da    PI: 4.4259
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G11250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.95.8e-2594152359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                      D y WrKYGqK + gs+f+r+YYrC+ +  gC++kk+v +s++dp+ +e+tY g+H+++
  LPERR07G11250.1  94 DAYPWRKYGQKGILGSRFARNYYRCAAQrsGCSAKKQVHQSDDDPSQMEVTYIGSHTCD 152
                      99************************9999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.23E-2192153IPR003657WRKY domain
SMARTSM007747.8E-2892153IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-2393152IPR003657WRKY domain
PROSITE profilePS5081119.64694154IPR003657WRKY domain
PfamPF031065.6E-2394152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAGGDGGTAA TKKHILRAQK STNQLKALLQ AEGGGGKSPG AVVEMILSDI SDSLSQALAS  60
VELGASGESS IMAPPPEASL SSAYGGGRWP DPGDAYPWRK YGQKGILGSR FARNYYRCAA  120
QRSGCSAKKQ VHQSDDDPSQ MEVTYIGSHT CDCDDRRPPS CTIPAAGAAV MSSALQKLEE  180
HVPELDMMMA VHCNPSMEEE DMAAPWLFIP SPACSQSELL PEVAMEVPEL KADADVDASQ  240
ADPVELDRKT SKKANDEEFL ALYDSVVPDL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-16911491574Disease resistance protein RRS1
5w3x_D3e-16911491574Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G11250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694621.11e-54PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A0D9WYJ80.0A0A0D9WYJ8_9ORYZ; Uncharacterized protein
STRINGLPERR07G11250.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141862125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-20WRKY DNA-binding protein 55