PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G10320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HB-other
Protein Properties Length: 304aa    MW: 33518.6 Da    PI: 5.1507
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G10320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.8e-203080656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++t e +++Le +Fek+++p++e+r +LAkklg++erqVk+WFqNrR ++k
  LPERR07G10320.1 30 RHTYEHVKQLEGAFEKCSHPTEEQRVDLAKKLGMEERQVKFWFQNRRSRKK 80
                     5788999******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.88E-171780IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-181780IPR009057Homeodomain-like
PROSITE profilePS5007116.2282282IPR001356Homeobox domain
SMARTSM003898.7E-142486IPR001356Homeobox domain
CDDcd000862.32E-182980No hitNo description
PfamPF000463.5E-173080IPR001356Homeobox domain
PRINTSPR000315.4E-65362IPR000047Helix-turn-helix motif
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PRINTSPR000315.4E-66278IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDGINNDDVY DHDGARDGQG KAMPYKNVKR HTYEHVKQLE GAFEKCSHPT EEQRVDLAKK  60
LGMEERQVKF WFQNRRSRKK VYDERQEGML LQEKSEILLL ENKVLKEAMH DKICFMCSNP  120
IIPAKQTLQQ CFLRFQNMML ADELQHATAV LDQVVHDADA GLPLVFPLSG ASDMPHYDGS  180
QTVYSQTSQE SGAIEAREAY EAIGDSTPAA AGDMLLVNGE PVSISSCGRH PGVGLHRDVG  240
GVEERRGGDG DGGERDEAVV AAASMPAVTA ASALVTLGEK ATGVRGIEEE GEKNKTKRYF  300
FSCN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G10320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WY810.0A0A0D9WY81_9ORYZ; Uncharacterized protein
STRINGLPERR07G10320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149301619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.12e-30homeodomain GLABROUS 7