PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR07G07940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 232aa MW: 26394.8 Da PI: 6.801 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 58 | 108 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ q++eLe++Fe+n+y+ +++r+eLAkklg++e+qVk+WFqN+R+++k LPERR07G07940.1 58 RHNDVQIKELESVFERNNYVGRKQRKELAKKLGMEEKQVKFWFQNQRTRKK 108 57889********************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.13E-18 | 44 | 108 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 47 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.763 | 50 | 110 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-16 | 52 | 114 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.95E-17 | 54 | 108 | No hit | No description |
Pfam | PF00046 | 4.5E-17 | 58 | 108 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 5.5E-6 | 81 | 90 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 85 | 108 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.5E-6 | 90 | 106 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MDNKFQQHSD DAHVLDLPIT SMLEVDDGME ETNDSAGDDP DYGGEGKDEA TSFKRMKRHN 60 DVQIKELESV FERNNYVGRK QRKELAKKLG MEEKQVKFWF QNQRTRKKMH DERHETMVLQ 120 EENKALAAKN KVLKEAISDQ ICLTCNRPVV LPAAKTIQMW YLRFENMRLH GELQRATVVL 180 NQLTQDANAG AVALTQFGSS AKNSQTRLVI DSPTPLKLEN VPSPNSANAI NP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR07G07940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9WXE4 | 1e-174 | A0A0D9WXE4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G07940.1 | 1e-174 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14930 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52170.1 | 9e-23 | homeodomain GLABROUS 7 |