PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR07G03250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 133aa MW: 14933.9 Da PI: 8.6141 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 91.8 | 1.7e-28 | 2 | 63 | 2 | 63 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshl 63 + +++se+vCyv+Cn+Cntil+v+vP+++++++vtvrCGhCt++ls++la ++q++++++h LPERR07G03250.1 2 SAQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQ 63 6789*******************************************************993 PP | |||||||
2 | YABBY | 118.4 | 1.2e-36 | 69 | 123 | 116 | 170 |
YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + PekrqrvPsaynrfikeeiqrik+snP+ishreafsaaaknWah+P++hfgl LPERR07G03250.1 69 FQAPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLPRLHFGL 123 568**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.5E-20 | 6 | 64 | IPR006780 | YABBY protein |
Pfam | PF04690 | 5.1E-34 | 65 | 123 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.83E-8 | 66 | 117 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 4.1E-6 | 70 | 117 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048833 | Biological Process | specification of floral organ number | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 133 aa Download sequence Send to blast |
MSAQFTSEHV CYVNCNYCNT ILVVNVPNNC SYNIVTVRCG HCTMVLSMDL APFHQARTVQ 60 DHQVQNRGFQ APEKRQRVPS AYNRFIKEEI QRIKTSNPEI SHREAFSAAA KNWAHLPRLH 120 FGLSVADGGG GSN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a role in floral meristem development and maintenance of stamens, rather than in determining polarity in floral organs. {ECO:0000269|PubMed:15604733, ECO:0000269|PubMed:17369428}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR07G03250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB274013 | 6e-95 | AB274013.1 Oryza sativa Japonica Group OsYABBY1 mRNA for OsYABBY1 protein, complete cds. | |||
GenBank | AF098752 | 6e-95 | AF098752.1 Oryza sativa clone FIL1 unknown mRNA. | |||
GenBank | AK070045 | 6e-95 | AK070045.1 Oryza sativa Japonica Group cDNA clone:J023038F18, full insert sequence. | |||
GenBank | CT828681 | 6e-95 | CT828681.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA230C13, full insert sequence. | |||
GenBank | CT828682 | 6e-95 | CT828682.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240F12, full insert sequence. | |||
GenBank | CT828683 | 6e-95 | CT828683.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA249C03, full insert sequence. | |||
GenBank | CT828684 | 6e-95 | CT828684.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN084I04, full insert sequence. | |||
GenBank | CT832577 | 6e-95 | CT832577.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z37, full insert sequence. | |||
GenBank | FJ750932 | 6e-95 | FJ750932.1 Oryza sativa clone KCS005G02 MADS-box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657460.1 | 2e-86 | PREDICTED: protein YABBY 1 | ||||
Swissprot | Q7XIM7 | 3e-85 | YAB1_ORYSJ; Protein YABBY 1 | ||||
TrEMBL | A0A0D9WVP6 | 3e-96 | A0A0D9WVP6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G03250.1 | 4e-97 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-48 | YABBY family protein |