PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G21680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25319.9 Da PI: 9.5587 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 89 | 143 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F+ ++ +s++++ e+A++l+L+ rqV vWFqNrRa+ k LPERR06G21680.1 89 RKKLQLTKEQSTLLENSFRLHNILSHAQKHEIARQLKLKPRQVEVWFQNRRARTK 143 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112.9 | 2.1e-36 | 89 | 177 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk++l+keq++lLE+sF+ ++ L++ +K+e+ar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een++L++e eL+ + LPERR06G21680.1 89 RKKLQLTKEQSTLLENSFRLHNILSHAQKHEIARQLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCKSLREENQQLKHELMELQ-R 177 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-17 | 67 | 146 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.26E-18 | 77 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.908 | 85 | 145 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.7E-13 | 87 | 149 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.8E-15 | 89 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.57E-14 | 89 | 146 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 120 | 143 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.2E-8 | 145 | 176 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.7E-15 | 145 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MYSPSRMEGE EDLGAWLGLA IGGGEALSPV KHVKEERRRC SDDHGVHDQQ SSGSNKMMKG 60 EKGARLRMMR NNNNGDGVLS LSCEGGGTRK KLQLTKEQST LLENSFRLHN ILSHAQKHEI 120 ARQLKLKPRQ VEVWFQNRRA RTKLKQTEVD CEFLKRCCKS LREENQQLKH ELMELQRLAA 180 AAQLYVPFPR SSAAAAMVNI CPSCDKITMI GSGEMAAKSS SSYSSE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 145 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G21680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643687.1 | 7e-83 | homeobox-leucine zipper protein HOX18 | ||||
Swissprot | Q5Z6F6 | 2e-83 | HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18 | ||||
TrEMBL | A0A0D9WTN8 | 1e-167 | A0A0D9WTN8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G21680.1 | 1e-167 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8130 | 34 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-45 | HD-ZIP family protein |