PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR06G19690.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 273aa MW: 29716.2 Da PI: 8.2287

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G19690.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52	1.5e-16	104	156	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 e kr rr+ +NRe+ArrsR+RK+a++ Le v++L +eN +L k+l e +++ LPERR06G19690.1 104 ETKRIRRMVSNRESARRSRRRKQAQLSDLESQVEQLRGENASLFKQLAETSQH 156 68*****************************************9877776655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-17	102	166	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.254	104	155	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-14	104	155	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-13	106	155	No hit	No description
SuperFamily	SSF57959	1.37E-12	106	157	No hit	No description
PROSITE pattern	PS00036	0	109	124	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MKKCPSELQL EAFIAGDGKL HGQGGFFSSS GEMSDLGFVD SNTLDGRRPE SIRTPPRHAF 60 SSISASPKAS TSANNGPESE SDSDSESLLD TERSPRLRGT RSTETKRIRR MVSNRESARR 120 SRRRKQAQLS DLESQVEQLR GENASLFKQL AETSQHFTTA VTDNRVLKSD VEALRVKVKM 180 AEDMVARATM SCGLGQLGLA PLLNSRKMCQ ALDMLAVTGL DLPRDGASFK GFNPSRQIQN 240 SPVQSAASLD SLDNRISSEV TSCSADEICA SFH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	125	RRSRRRKQ
2	120	125	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G19690.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643805.1	1e-111	bZIP transcription factor RISBZ5
Swissprot	Q654B3	1e-112	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	A0A0D9WSX0	0.0	A0A0D9WSX0_9ORYZ; Uncharacterized protein
STRING	LPERR06G19690.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	4e-26	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]