PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G18130.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 402aa    MW: 44758 Da    PI: 9.4315
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G18130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.26.9e-14134223397
                      EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      k l ++d      + +p kf+ +h       +++++  ++  + g+ W+v+l  ++ +  ++l++GW  F  a++L eg +++F+++g++ f  
  LPERR06G18130.1 134 KLLQQEDL---EKMKIPGKFVHKHlteaF--TNSQQNAIIVCPLGKFWRVEL--EREQPDVLLQDGWPAFLVAHDLSEGNILLFRYEGNMVF-- 218
                      55533333...3478**********9642..45666899999**********..99999*****************************9999.. PP

                      EEEEE CS
               B3  93 vvkvf 97 
                      +v+vf
  LPERR06G18130.1 219 MVQVF 223
                      99887 PP
2B341.22.9e-13310392387
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      ++++++++ +s +l l   f++++g+ +++s+tl++  ++  sW+v ++ + +  +y+ + GW++F+ +n++kegD ++F  ++r
  LPERR06G18130.1 310 TKEMTAYSIRS-LLALGGMFCSQIGLLEACSITLKISMQKKGSWRVAFK-TANTYGYINGPGWRKFCLENEVKEGDRCTFNAIKR 392
                      44557777766.59999*******************************5.5555579***********************97653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.02714111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-917113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-819113IPR015300DNA-binding pseudobarrel domain
CDDcd100174.08E-924101No hitNo description
PROSITE profilePS508638.09226111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-20126228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-19128232IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.942129226IPR003340B3 DNA binding domain
CDDcd100178.90E-15130223No hitNo description
SMARTSM010194.3E-7132226IPR003340B3 DNA binding domain
PfamPF023626.7E-11140223IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-15306400IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-13307400IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-7308393No hitNo description
SMARTSM010190.052309400IPR003340B3 DNA binding domain
PfamPF023621.4E-10309391IPR003340B3 DNA binding domain
PROSITE profilePS508639.46340402IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MALSAGCFRR RPKLAAPLLS PTCLRRLSVP GEFAAALAGD EVLVVGPLGK VWRVEMCREA  60
ADGDGEEEAC WWLGGGGWAE MAAAYGLGEG WSVVLRLERR GVASLRAFDP DCCLASFCTP  120
HPGIKSKDRP RFIKLLQQED LEKMKIPGKF VHKHLTEAFT NSQQNAIIVC PLGKFWRVEL  180
EREQPDVLLQ DGWPAFLVAH DLSEGNILLF RYEGNMVFMV QVFLENGCPK EYKTTTLYLT  240
DGSKGPSNAL QQSVTKVAVS PAKKKRRQRN EGICLEGSNR KSRASPISVK KVKVEPQKKY  300
ASIVSQNSFT KEMTAYSIRS LLALGGMFCS QIGLLEACSI TLKISMQKKG SWRVAFKTAN  360
TYGYINGPGW RKFCLENEVK EGDRCTFNAI KRTLWHVSIV HC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262266KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G18130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047926e-85AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04.
GenBankAP0149626e-85AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642658.10.0putative B3 domain-containing protein Os06g0632500 isoform X1
SwissprotQ67VL70.0Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLA0A0D9WSC20.0A0A0D9WSC2_9ORYZ; Uncharacterized protein
STRINGLPERR06G18130.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.17e-17B3 family protein