PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G15020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 260aa MW: 27430.4 Da PI: 4.3657 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57 | 4.7e-18 | 47 | 94 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ LPERR06G15020.1 47 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 94 57*****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.74E-20 | 47 | 107 | No hit | No description |
Pfam | PF00847 | 1.4E-12 | 47 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-21 | 48 | 106 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-31 | 48 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.037 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.8E-35 | 48 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-10 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MPDQQQQDQV CSPASSGNSA SPPESPAARR GGEKRGRNNG GDGGRHPSYR GVRMRAWGKW 60 VSEIREPRKK SRIWLGTFPT PEMAARAHDA AALVVKGPAA VLNFPAAAAS LPRPASASPR 120 DVQAAAALAA AMAPIDDIDV PTVACCAPST VTSPVNAVAG KDSDCDEELE EIFEVPPIDD 180 EFDVAAAGLV FGGSSDTAFH DDDLVNAAEM WYDQPAAWRQ DAAGGIAVHE GDGLWFERPP 240 EQVWADGIVA SGFGTLLWNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-18 | 41 | 105 | 7 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G15020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003682 | 1e-78 | AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07. | |||
GenBank | AP014962 | 1e-78 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193635.1 | 4e-59 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9LYD3 | 7e-50 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A0D9WR53 | 0.0 | A0A0D9WR53_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G15020.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 6e-22 | ERF family protein |
Publications ? help Back to Top | |||
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