PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G12060.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 459aa    MW: 50628.9 Da    PI: 5.1111
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G12060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-08172215447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT +E+ l++ + + +G g Wk I+r +   +t+ q+ s+ qk+
  LPERR06G12060.1 172 WTIDEHRLFLWGLQHYGRGEWKNISRFFVPSKTPVQVSSHAQKF 215
                      *****************************9************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.338164220IPR017930Myb domain
SMARTSM007172.6E-5168218IPR001005SANT/Myb domain
SuperFamilySSF466892.5E-14168221IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-13170218IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-7171211IPR009057Homeodomain-like
CDDcd001677.20E-6172216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDPMFSGMEW TDVEKEGARS IIAKLSNHFD VFGAGNGNKD TRHDRIVSEL EAWFPWMTRK  60
QVIDLYVDIV VDMSQQAPVQ PHDAGSSVHP TFEPIKDNLG MLPGEDPAMN NVNFGMNKNN  120
YYDGSGMVFG DAPIGETVEQ APPTPVVNSG NEVNWGSGRQ HAEPKSGKSR FWTIDEHRLF  180
LWGLQHYGRG EWKNISRFFV PSKTPVQVSS HAQKFFRRLE RADVKQRYSI NDVGLNDAEN  240
PVDNNYSGWQ AHAFAGGNDS VTARHAAHPE NTSSVTAMNN DVGHYGLPDP LDNNYGGWQA  300
LALTGGHLNP VSGYGAGGHN IASPATSSAT AMRNVAQLWA PLLYNPQKQQ QQQQFTHMQV  360
PRPQQEWNHQ QMMGAAATPL MEGEASWNAA PMEGGAMWND QQMMGAAAVP MEEAFDNFAP  420
FGGATDNFAS ASGSGYYQHE QGTSNDVPVE PWMMNKNIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G12060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WQ430.0A0A0D9WQ43_9ORYZ; Uncharacterized protein
STRINGLPERR06G12060.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.22e-19MYB_related family protein