PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G12030.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 460aa    MW: 50983.7 Da    PI: 5.0196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G12030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.2e-07172215447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      WT +E+  ++ + + +  g+Wk I+r +   +t+ q+ s+ qk+
  LPERR06G12030.1 172 WTIDEHRMFLWGLQHYRRGDWKNISRFFVPSKTAVQVSSHAQKF 215
                      *****************************9************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.541164220IPR017930Myb domain
SMARTSM007173.7E-4168218IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-13169221IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-12170218IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.8E-6171211IPR009057Homeodomain-like
CDDcd001678.99E-5172216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MDPMFCGMEW TDVEKEEARS IITKLSNDFD VVGTGNGNRD TRHDRIVSEL AAWFPWMTRK  60
QVIDLYIDIV ADMSQQALVQ PQDAGSTVHP TFEPIKDNFS MLPGEYASMN NFDFGMNKNN  120
YYDGSGMVFG DAPIAEMVEQ APPTPVVNSG NEVNWGSGHQ HAEPKGGKSR FWTIDEHRMF  180
LWGLQHYRRG DWKNISRFFV PSKTAVQVSS HAQKFFRRLE RADVKQRYSI NDVGLNDAEN  240
PLDNNYSGWQ AHAFAGGNVS VTAGRAAPPE NTSSIPGMNN DVSHYGLLDP LDNNYGSWQA  300
LGFTGSHLNH VGGYGAGGHN IASLATSSAA AMKNVAQLWA PLLYKPLKKQ QQQEQFTQMQ  360
VPLPQQEWNH QQMMGAAATP LMEGEAWWNA APMEGGAMWN DQQMMGAAAV PMEEAFDNFA  420
PFGGAANNFA SASGSGSYQH ERGTSNDFAA EPWMMNKNMF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G12030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WQ410.0A0A0D9WQ41_9ORYZ; Uncharacterized protein
STRINGLPERR06G12030.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.24e-17MYB_related family protein