PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G10600.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 613aa    MW: 70338.9 Da    PI: 9.605
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G10600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.9e-07413453346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e++ + v+q G+  W + a+ +g  +++ ++k+ w+ 
  LPERR06G10600.1 413 KWTPEEYEKIRRHVEQNGTS-WISLAQQLG--KSEIHLKDTWRR 453
                      8*****************99.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0092337408IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-5340401IPR009057Homeodomain-like
PROSITE profilePS500904.519340406IPR017877Myb-like domain
SuperFamilySSF466893.2E-8386467IPR009057Homeodomain-like
SMARTSM007170.98410457IPR001005SANT/Myb domain
PROSITE profilePS500906.853413455IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-9413465IPR009057Homeodomain-like
PfamPF139211.3E-8414472No hitNo description
PROSITE profilePS500907.294456524IPR017877Myb-like domain
SMARTSM007173.3460526IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-7466509IPR009057Homeodomain-like
SuperFamilySSF466893.26E-6504581IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-4510576IPR009057Homeodomain-like
PROSITE profilePS500907.758526579IPR017877Myb-like domain
SMARTSM0071776530581IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MNREGAEQEE RCSKKKKGKR TEGDEEVVKR DSCTDAPGSS KGNVVMDVEK AKEGNTRKKK  60
KKEKGREKDK KSKGSDDNIK VASAETEHAE GDMSRCSVDE DKSIKKDNKS KKKKKIERKA  120
EMSGKEQVRV GSTDENAGLE HADVDMGDKE QGTKSKKRKR KHADDEPAEH VFAHEEIVTN  180
IDKKTRKEHS VEFEGDQVNA SKMVVKTKGN KKRINESDKF NPDISIDKLT RGDDKNGKKR  240
KKNGTLTKGD EVGQDGKNDK KKRKSKEGDE VGIDGENDKK KKKSKEGNGG RKSEKERATW  300
SKDKVRRVSF ADSVEVFTMN GDEDKENDNS AESEVVHGVR FTPEENATLL EAINNYIEMK  360
QLGENGLDMI RASGKHPELK GCWAEIAKSL PHRPIQAIYK RARILLFRSD ERKWTPEEYE  420
KIRRHVEQNG TSWISLAQQL GKSEIHLKDT WRRIKPKNLK AGPWTQDEYQ NLFDLVNLDL  480
RVKAHQKYNA GNRKLRDNIA WEAISDKLTT RNHKNCCLKW YHQLASPLVQ KGVWADTDDY  540
RLVETLQNVD AVCIEDVDWD NLLDHRSGEV CRKRWNEMVR NIGGHREKPF IEQVEVLSKR  600
YCPEMLDYRE GEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15662RKKKKKE
25663RKKKKKEK
3155160KKRKRK
4237241KKRKK
5261282KRKSKEGDEVGIDGENDKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G10600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643783.10.0RNA polymerase I termination factor isoform X1
TrEMBLA0A0D9WPL90.0A0A0D9WPL9_9ORYZ; Uncharacterized protein
STRINGLPERR06G10600.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.13e-96MYB_related family protein