PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G10590.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 424aa    MW: 47727.7 Da    PI: 6.8854
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G10590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-1288166185
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k +++s+v +  +l lp +f+++h   k  +++ l+le  +g+  + ++   +++++  l++GW++F+  +++ +gD+vvF+l+
  LPERR06G10590.1  88 FIKNMLQSHVVRGFWLGLPSDFCNKHlP-K--NDTGLVLEEANGNCHDTTF--LGGKQG--LSAGWRGFALKHDIIVGDVVVFQLV 166
                      89************************42.2..3456***************..888888..9**********************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1381166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1682166IPR015300DNA-binding pseudobarrel domain
CDDcd100172.45E-1686166No hitNo description
SMARTSM010197.6E-788180IPR003340B3 DNA binding domain
PROSITE profilePS508639.67188189IPR003340B3 DNA binding domain
PfamPF023625.0E-1088166IPR003340B3 DNA binding domain
CDDcd146880.00906374418No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEKKTPLVHQ RLALLDSSSG SDKDDDFEPG AVAIDYDDMD DVVVVGAAPL KVPVKVQNNC  60
VSAQECRGSA MERAKELQAN LQAEYPSFIK NMLQSHVVRG FWLGLPSDFC NKHLPKNDTG  120
LVLEEANGNC HDTTFLGGKQ GLSAGWRGFA LKHDIIVGDV VVFQLVYIVR ETNLTTADGV  180
LGLMSFATRK KRKISTKEKR SDNFKSEDPK TCRNSTKGDH NDNQNLVSEA IDGIRFSKSE  240
ISFDDVTSFS NFNIIVDGLV IDCKFPDHER MMYYEICCSQ KSFLHNHLLK HLNFKLVVGV  300
IMETIKIAEG IRACKADNSS YDDFLVWKKT LQSFELLGMK VAFLIKRIDD LLCLPAQPRD  360
PSECSKYKDI KLARSRAREK MKALESKFSS LTDELKKMDD EMEELESSVR KHDIALKKIA  420
TAPW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G10590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015699237.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0D9WPL80.0A0A0D9WPL8_9ORYZ; Uncharacterized protein
STRINGLPERR06G10590.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-31B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]