PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G03560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 387aa    MW: 40805.9 Da    PI: 5.2085
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G03560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.65.2e-28135195259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++ g++fpr+YYrCt++   gCp++k+v+rs+ d  v+++tY+g H+++
  LPERR06G03560.1 135 DDGFSWRKYGQKDILGAKFPRGYYRCTYRnaqGCPATKQVQRSDADLAVFDVTYHGAHTCH 195
                      8***************************98889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.7E-28125196IPR003657WRKY domain
PROSITE profilePS5081122.286129192IPR003657WRKY domain
SuperFamilySSF1182901.01E-24133196IPR003657WRKY domain
SMARTSM007745.1E-41134196IPR003657WRKY domain
PfamPF031061.2E-26135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MQDGAIGGGG GDIHMLMSIL ADGEEQARQL GEAAAAATAD ESSYYRGMAR QLQCTFASAM  60
AVARTIDSAA ATTTTTGDRS DSPRSADESS ARTARDGGVV AAQQERQDMS KRRKGLPRWT  120
EKFRVPDANL EATPDDGFSW RKYGQKDILG AKFPRGYYRC TYRNAQGCPA TKQVQRSDAD  180
LAVFDVTYHG AHTCHQKQRH VTTTAAGKNS PPPPPPEADP SAELLVNNFK HGLKVETNNG  240
LAPPPAANFD DQQFCFPSVQ PFHDDAGGGG FTSPAFVSPA GSSAAGGSSY FSVDHCYGGE  300
PLGQFVMSRG DSSELHEVVS AATSTEAAAV VDPSAAAVTV ATAGGGFVVD YPLSYLQHAG  360
GELIDDPHLP FPPLFGPASM YGQYRDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-191361921874Disease resistance protein RRS1
5w3x_D5e-191361921874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G03560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419191e-143AK241919.1 Oryza sativa Japonica Group cDNA, clone: J075074E04, full insert sequence.
GenBankAK2879851e-143AK287985.1 Oryza sativa Japonica Group cDNA, clone: J075093G10, full insert sequence.
GenBankAY6769321e-143AY676932.1 Oryza sativa (indica cultivar-group) transcription factor WRKY100 (WRKY100) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643057.11e-143probable WRKY transcription factor 30
TrEMBLA0A0D9WM540.0A0A0D9WM54_9ORYZ; Uncharacterized protein
STRINGLPERR06G03560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.16e-40WRKY family protein