PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G01360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 22326.5 Da PI: 4.6014 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.5e-18 | 39 | 90 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ grWv+e+r+p +k+ r++lg+f tae Aa+a++ a+++l+g LPERR06G01360.1 39 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATAEAAARAHDVAALALRG 90 68****************9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.8E-14 | 39 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-25 | 40 | 104 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-30 | 40 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-20 | 40 | 100 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.234 | 40 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-5 | 41 | 52 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.46E-13 | 41 | 100 | No hit | No description |
PRINTS | PR00367 | 1.0E-5 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MEYDEQEISM NGGGEYATVM SAPPKRPAGR TKFRETRHPV YRGVRRRGPA GRWVCEVREP 60 NKKSRIWLGT FATAEAAARA HDVAALALRG RGACLNFADS ARLLRVDPST LSTPDDIRRA 120 AIELADATAA ADASSSSSSA AAAPAMMQYQ EEYDVAAAYD YAYYDCFDQP GYYYDGMGGG 180 GGEWQMDGDE DGGAGGYGGG DVTLWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 38 | 97 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G01360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP001168 | 1e-128 | AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02. | |||
GenBank | AP002838 | 1e-128 | AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22. | |||
GenBank | AP014962 | 1e-128 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY327040 | 1e-128 | AY327040.1 Oryza sativa (japonica cultivar-group) transcription factor CBF1 mRNA, complete cds. | |||
GenBank | CP012614 | 1e-128 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642451.1 | 4e-69 | dehydration-responsive element-binding protein 1C | ||||
Swissprot | A2Y8S6 | 3e-70 | DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C | ||||
Swissprot | Q9LWV3 | 3e-70 | DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C | ||||
TrEMBL | A0A0D9WL94 | 1e-148 | A0A0D9WL94_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G01360.1 | 1e-149 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 3e-33 | dehydration response element B1A |
Publications ? help Back to Top | |||
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