PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G00490.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 517aa    MW: 57338.9 Da    PI: 7.224
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G00490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-083053421954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  LPERR06G00490.1 305 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 342
                      554459******************************88 PP
2BELL92.54.2e-30165233472
             BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +l+++ka++ls++eeVd+rY++y eq++ v   Feavag g+a++Yt+lA++a+SrhFrcL+da+++q+
  LPERR06G00490.1 165 DLERRKARILSMIEEVDRRYRRYGEQMRLVEVWFEAVAGSGAAQVYTKLAMRAMSRHFRCLRDALVGQV 233
                      799***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-48103231IPR006563POX domain
PfamPF075268.7E-37109229IPR006563POX domain
PROSITE profilePS5007111.58283346IPR001356Homeobox domain
CDDcd000866.32E-11286347No hitNo description
SMARTSM003898.2E-9286350IPR001356Homeobox domain
SuperFamilySSF466897.27E-17287353IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-27289352IPR009057Homeodomain-like
PfamPF059202.4E-17303342IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MMAQHQQQHH HFFDFSSPPN AMISSSSSSF DHAAGLLSLH DAAAADDDHV HVHVRAAGSG  60
PSPWSQQQVS LNLYNPAAAA GAGPFHQHQQ QIAAAPAAMQ MQQQPLFQLR ESKYLGPVKD  120
LLAEFWSLEI EATNNHTNPK MGKWDDDSSS TSWGNLSLSS MDLIDLERRK ARILSMIEEV  180
DRRYRRYGEQ MRLVEVWFEA VAGSGAAQVY TKLAMRAMSR HFRCLRDALV GQVRALRKAM  240
GERDAAGGMV APGATKAHTP RLRVLDQCLR QQRTFQQSGA IDNFPWRPQR GLPERAVAAL  300
RAWLFEHFLH PYPNDVDKHI LARQTGLSRS QVSNWFINAR VRLWKPMIED MYKEETNPES  360
DSSKLNPTNA GGGSAGNKLV EQHRDDKNNY TAATTIQSST TATSLLVGQS YHHLRSSANS  420
NNSSSLIQSN IDHQAADGGS HQQLFGHSYS SASASLHGGR AVSLTLGLQH QQPPFSSASM  480
AMQQQQSFMV ELAAEEEDDA LPYRNLMESQ LLHDFAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-14292349562Homeobox protein Meis2
3k2a_B1e-14292349562Homeobox protein Meis2
4xrm_A1e-14292349562Homeobox protein Meis2
4xrm_B1e-14292349562Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G00490.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2188950.0AB218895.1 Oryza sativa Japonica Group mRNA for OsBEL protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641004.10.0homeobox protein BEL1 homolog
TrEMBLA0A0D9WKX20.0A0A0D9WKX2_9ORYZ; Uncharacterized protein
STRINGLPERR06G00490.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.14e-90TALE family protein