PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G00470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 25951.5 Da PI: 6.9586 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.8 | 1e-26 | 21 | 70 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+ + rqvtfskRr+g+lKKA+ELSvLCdaeva+++fs++g+++ ++s LPERR06G00470.1 21 RIEDATSRQVTFSKRRKGLLKKASELSVLCDAEVALLVFSPRGRFFHFAS 70 8*********************************************9986 PP | |||||||
2 | K-box | 66.5 | 9e-23 | 96 | 186 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +l++++ ++++ +++ + ei + + R+++GedLes+sl+eL+ Le qLeksl++iR +K++ ++++i+elq++ek l+een L + l LPERR06G00470.1 96 ELTAHHVQKMKIQAETIATEIGTVEAYTRKMQGEDLESCSLQELNDLEMQLEKSLSSIRLHKQKKMMDKISELQQQEKILSEENALLLSDL 186 488999******************************************************************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-32 | 9 | 71 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.039 | 12 | 72 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 14 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-24 | 14 | 34 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.63E-28 | 15 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.44E-35 | 18 | 89 | No hit | No description |
Pfam | PF00319 | 1.2E-25 | 21 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-24 | 34 | 49 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-24 | 49 | 70 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.0E-20 | 99 | 185 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.718 | 102 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAAAAAVGGG RRRGGRREMR RIEDATSRQV TFSKRRKGLL KKASELSVLC DAEVALLVFS 60 PRGRFFHFAS APDLEDTIDR YISHTEEAAA NKKPGELTAH HVQKMKIQAE TIATEIGTVE 120 AYTRKMQGED LESCSLQELN DLEMQLEKSL SSIRLHKQKK MMDKISELQQ QEKILSEENA 180 LLLSDLQCKV QHVPSEADDA APERELNHQH SRDIDVDTEL KSVPKQFMPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-16 | 15 | 86 | 2 | 74 | MEF2C |
5f28_B | 4e-16 | 15 | 86 | 2 | 74 | MEF2C |
5f28_C | 4e-16 | 15 | 86 | 2 | 74 | MEF2C |
5f28_D | 4e-16 | 15 | 86 | 2 | 74 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G00470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241055 | 1e-157 | AK241055.1 Oryza sativa Japonica Group cDNA, clone: J065063N18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015693944.1 | 1e-105 | PREDICTED: MADS-box transcription factor 50-like isoform X1 | ||||
TrEMBL | A0A0D9WKW7 | 1e-168 | A0A0D9WKW7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G00470.1 | 1e-169 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17434 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-50 | AGAMOUS-like 20 |