PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G21420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ARF | ||||||||
Protein Properties | Length: 720aa MW: 78750.5 Da PI: 7.1652 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.9 | 1.1e-24 | 150 | 251 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + + LPERR05G21420.1 150 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGD 240 99****************************963.3445679************************************************..348 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++el+++v+r+ LPERR05G21420.1 241 DGELRLGVRRA 251 9999***9996 PP | |||||||
2 | Auxin_resp | 112.5 | 4.1e-37 | 276 | 356 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +aha+ t+svF+++YnPr s+seF+v+++k++k+l+++++vGmRfkm++e+ed+ err++G+++g d+dp W++SkW++L LPERR05G21420.1 276 VAHAVGTESVFNIYYNPRLSQSEFIVPYWKFMKSLSQPFAVGMRFKMRYESEDATERRYTGIITGSGDTDP-MWHGSKWKCL 356 699********************************************************************.9********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-40 | 144 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-43 | 145 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.42E-23 | 148 | 250 | No hit | No description |
SMART | SM01019 | 5.3E-23 | 150 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.493 | 150 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-22 | 150 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.3E-31 | 276 | 356 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MAGIDLNTVE EDEEEAAAAA EKVAAAANFS PAPAARTSAV CLELWHACAG PVLPLPRKGS 60 VVVYLPQGHL DHLADASSSA AAAAAAVQPH VFCRVVDVTL LADAATDEVY AQLSLVPEKE 120 EVARRTEDGD GEEDGDAATK QRFARMPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD 180 YSQQRPSQEL VAKDLHGTEW RFRHIYRGQP RRHLLTTGWS AFVNKKKLVS GDAVLFLRGD 240 DGELRLGVRR AAQLKNGSAF PALYNQCSNL GTLANVAHAV GTESVFNIYY NPRLSQSEFI 300 VPYWKFMKSL SQPFAVGMRF KMRYESEDAT ERRYTGIITG SGDTDPMWHG SKWKCLLVRW 360 DDDAEFRRPN RVSPWEIELT SSVSGSHLST PHSKRLKPCL PHVNPDYMAP HGGGCPDFAE 420 SAQFHKVLQG QELLGFKSHG GTAVATSQPC EARHLQYINE RSCSNDASNS ILGVPRLGDR 480 APLGNQGFPY HCSGFGESQR LQKVLQGQEV FRPYRGTLVD ASIGSNGFHQ QDGPRAPGVV 540 NKWHAQLHGR AAFHGPPAPA IPSQSSSPPS VLMFQQANSK MPRFEFGLGQ LDRRESDGRV 600 RLVPSEGIER REQRIPPQPY PTPGEVIDGQ PTVEKSHSPG RVGKDGPDNK AVGTNSCKIF 660 GISLTETVPA REELDHGDAN YSLQSLKQVP KSLGNSCATV HEQRPVVGRV IDISTMDMMI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-116 | 23 | 386 | 1 | 361 | Auxin response factor 1 |
4ldw_A | 1e-116 | 23 | 386 | 1 | 361 | Auxin response factor 1 |
4ldw_B | 1e-116 | 23 | 386 | 1 | 361 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G21420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071290 | 0.0 | AB071290.1 Oryza sativa OsETTIN1 mRNA for Arabidopsis ETTIN-like protein 1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881421.1 | 0.0 | auxin response factor 15 isoform X1 | ||||
Swissprot | Q8S985 | 0.0 | ARFO_ORYSJ; Auxin response factor 15 | ||||
TrEMBL | A0A0D9WJQ6 | 0.0 | A0A0D9WJQ6_9ORYZ; Auxin response factor | ||||
STRING | LPERR05G21420.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2537 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-162 | ARF family protein |
Publications ? help Back to Top | |||
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