PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G18660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ARF | ||||||||
Protein Properties | Length: 704aa MW: 76417.8 Da PI: 7.2912 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 66.1 | 5.3e-21 | 134 | 251 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE.........EEETTEEEE-TTHHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliy.......rkksgryvltkGWkeFvkan 72 f+k+lt sd++++g +++p++ ae++ + + s++l+ +d++g +W++++iy +++++r++lt+GW++Fv+ + LPERR05G18660.1 134 FCKTLTASDTSTHGGFSVPRRAAEDCfpplviqltsnlydyKTIR-PSQELIAMDLHGTQWKFRHIYrvlgkgqKGQPRRHLLTTGWSSFVNRK 226 99******************************9999999863332.4569********************9888888888************** PP T--TT-EEEEEE-SSSEE..EEEEE-S CS B3 73 gLkegDfvvFkldgrsefelvvkvfrk 99 +L +gD v F + ++++l+++v+r+ LPERR05G18660.1 227 KLVSGDAVFFL--RGDDGQLRLGVRRA 251 ***********..34888899999986 PP | |||||||
2 | Auxin_resp | 107.9 | 1.1e-35 | 276 | 356 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+++++ks+F+v++nPr+++seF+v+++++ k+l++++s+GmRfk+ +e+eds+er+ sG+v+++s++dp+rWp+S+W++L LPERR05G18660.1 276 VASSLENKSIFHVCFNPRSGASEFIVPYWRFTKSLNHPFSIGMRFKICYEGEDSNERS-SGLVSSISEVDPIRWPGSRWKCL 356 578899***************************************************9.9*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-36 | 124 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-33 | 129 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.98E-19 | 132 | 250 | No hit | No description |
Pfam | PF02362 | 7.6E-19 | 134 | 251 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-16 | 134 | 252 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.632 | 134 | 252 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.5E-29 | 277 | 356 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MGIDLNTVDE EESEASATPV VCGELWHACA GPGVALPRRG SAVVYLPQAH LATGGGGGGD 60 VPPGAVAVPP HVACRVVDVE LRADAATDEV YARLALVAEG EMLRRNFHDG GGEDGAEETE 120 GCDTEKKPRM PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLVIQLTSN LYDYKTIRPS 180 QELIAMDLHG TQWKFRHIYR VLGKGQKGQP RRHLLTTGWS SFVNRKKLVS GDAVFFLRGD 240 DGQLRLGVRR AVPLRNEALF EPVNSSDSKL RILSSVASSL ENKSIFHVCF NPRSGASEFI 300 VPYWRFTKSL NHPFSIGMRF KICYEGEDSN ERSSGLVSSI SEVDPIRWPG SRWKCLVVRW 360 DDSTDSSHQN RVSPWDIERV SGSVSATHSL SSSSSKRTKL HFPQGNLDTP FLNGNGNPDS 420 METGNFHRVL QGQEFRGSRS LGAVCSEPPG VPFFQAPDNR RFSADMQGYM MPASGPLRQN 480 TQFTYQPVGF GESLRFPEVL QGQEMSQAVP LFRGASFGAH TQNGRVVSAN SLPRSAAPTG 540 FPAATQGLPV SQFALSASKV SSPSSVLMFN QATAPHLEPE SGTNNKGIHG SQFFSQEMLI 600 DTVTWPGIQH KMSSEITSNP FAMAKTSAPS SRAESGSPKR DSGRSSCRLF GFSLTENMLG 660 EEGEGLEEES NKADCQGPRV LELFGRRHST PGALRALCAA PLGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 9e-89 | 21 | 378 | 19 | 353 | Auxin response factor 1 |
4ldy_B | 9e-89 | 21 | 378 | 19 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G18660.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637659.1 | 0.0 | auxin response factor 14 | ||||
Swissprot | Q0DGS1 | 0.0 | ARFN_ORYSJ; Auxin response factor 14 | ||||
TrEMBL | A0A0D9WIM9 | 0.0 | A0A0D9WIM9_9ORYZ; Auxin response factor | ||||
STRING | LPERR05G18660.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5113 | 27 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-130 | ARF family protein |
Publications ? help Back to Top | |||
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