PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G16310.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Protein Properties

Length: 302aa MW: 33733.9 Da PI: 9.3015

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G16310.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.3	1.4e-18	142	229	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k++++s+v++ +l lp +f++ h + +++++++lede+g +++ + +++ + l++GW++F+ ++L++gD++vF+l++ ++f ++ LPERR05G16310.2 142 FVKTMVRSHVSSCFWLGLPTRFCKLHL-P-PREFKMVLEDEEGGEFDSVY--IGNRTG--LSGGWRGFAMHKNLEDGDSLVFELVEPDRF--KI 227 89*******************8774.4.4779************..555444..*********************9987777..55 PP EE CS B3 95 kv 96 + LPERR05G16310.2 228 YI 229 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.6E-21	134	232	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-24	135	231	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.63E-27	140	231	No hit	No description
Pfam	PF02362	2.5E-17	142	230	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.266	142	233	IPR003340	B3 DNA binding domain
SMART	SM01019	2.1E-23	142	233	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MVRRRGGGGS VAAEAAGEAS GAAYEEERRK RVLENLKHLE DLGISKMSKS LLEAARLQKT 60 TRASPKPRKK FEATEVRRSS RARNSVSLNV IDYLVVLNRG GSRNTEQGRD YTGRIASYEQ 120 QQRAYKRAER IQNSLDPENP SFVKTMVRSH VSSCFWLGLP TRFCKLHLPP REFKMVLEDE 180 EGGEFDSVYI GNRTGLSGGW RGFAMHKNLE DGDSLVFELV EPDRFKIYII KAADEDVNES 240 EPVDEEADGD KKDTDTKDAV EQDDSPNAEP LKGAKRRKLC GRRSCLAFSS KAGSLTKKSA 300 SP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	276	LKGAKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G16310.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068705	0.0	AK068705.1 Oryza sativa Japonica Group cDNA clone:J013160D16, full insert sequence.
GenBank	HQ858877	0.0	HQ858877.1 Oryza sativa Japonica Group isolate UT1755 ABIVP1 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639491.1	1e-157	B3 domain-containing protein Os05g0481400 isoform X2
Swissprot	Q5KQI4	1e-158	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A0D9WHT2	0.0	A0A0D9WHT2_9ORYZ; Uncharacterized protein
STRING	LPERR05G16310.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	4e-41	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]