PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G14610.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 348aa    MW: 37622.4 Da    PI: 6.4165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G14610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.6e-17177224555
              AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      GVr ++ +g+++AeIrd + ng  +r++lg+f t+e+Aa a+++a+++ +g
  LPERR05G14610.1 177 GVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFNTPEQAALAYDQAALAVRG 224
                      9*****.**********44465..***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.784174232IPR001471AP2/ERF domain
PRINTSPR003671.5E-7175186IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-20175233IPR016177DNA-binding domain
PfamPF008476.1E-12176224IPR001471AP2/ERF domain
CDDcd000182.44E-23177232No hitNo description
SMARTSM003807.0E-28177238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-26177233IPR001471AP2/ERF domain
PRINTSPR003671.5E-7198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEPNYNYYHQ HSCVPFDAYH GHGHFDDQGH GHHLIPYCHS TTKMTTPPEP SSFYHCKYWS  60
FVQTDATTIS SSESSASGRN SGAAAHNVAN TISTTRGDVA FVRQLHFGGE YYDDDTGNIS  120
ALLEAASISS WTHGGASTSL AAAEEKAAAA VAAAQPDGGS SDNGGSDKEA AARQLIGVRK  180
RPWGKYAAEI RDSTRNGARV WLGTFNTPEQ AALAYDQAAL AVRGAGAVLN YPLHRVRESL  240
RTLELGAGGA ASESPVLALK RRHRIRKRST TKKTPAASKT DEIIPELAEG KKKQQVDTTG  300
HHHEKEKQMA SSLPCVLELE DLGTDYLEEL LALSEEQPDA RPDIVDDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22177234865ATERF1
3gcc_A1e-22177234865ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G14610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306021e-118AC130602.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1122D01, complete sequence.
GenBankAP0149611e-118AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638626.11e-112ethylene-responsive transcription factor ERF094
TrEMBLA0A0D9WH530.0A0A0D9WH53_9ORYZ; Uncharacterized protein
STRINGLPERR05G14610.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-22ethylene-responsive element binding factor 15