PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G14390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 268aa MW: 29806.9 Da PI: 5.9296 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.6 | 1.9e-43 | 4 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppG+rF Pt+eelv++yL++k++g++ ++e+vi+ +d+++++Pw+Lp + +++ + w++F++r++++a+g r++r+t sgyWka LPERR05G14390.1 4 LPPGYRFYPTEEELVCFYLRHKLDGRRgSDIERVIPVADVCSLDPWQLPGtsqvhqgAWTGDGEPWFYFCPRQEREARGGRPSRTTPSGYWKAA 97 79***********************998888889**************94365554433347779***************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+ v+s++g+ +g+kkt+vfy+grap g+kt+W m+eyr+ LPERR05G14390.1 98 GTPGWVYSADGRPIGTKKTMVFYRGRAPAGTKTKWKMNEYRA 139 ****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-49 | 3 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.72 | 4 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-24 | 5 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MGELPPGYRF YPTEEELVCF YLRHKLDGRR GSDIERVIPV ADVCSLDPWQ LPGTSQVHQG 60 AWTGDGEPWF YFCPRQEREA RGGRPSRTTP SGYWKAAGTP GWVYSADGRP IGTKKTMVFY 120 RGRAPAGTKT KWKMNEYRAL EDEADADAAR AAVPALNPYL QTKSEFSLCR LYTRSGCPRQ 180 FDRRPSSSVA GGGRSENPGP SALANADAET GQGQKRKRSP ENDGTSSSDD NGDGNGSILQ 240 PQQQRQRSAD EELVECNMID WADFLDWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-31 | 4 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-31 | 4 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-31 | 4 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-31 | 4 | 174 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-31 | 4 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-31 | 4 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-31 | 4 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-31 | 4 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-31 | 4 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-31 | 4 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-31 | 4 | 174 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-31 | 4 | 174 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-31 | 4 | 174 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-31 | 4 | 174 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G14390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063703 | 0.0 | AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence. | |||
GenBank | JN185442 | 0.0 | JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638341.1 | 1e-129 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-66 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0D9WH20 | 0.0 | A0A0D9WH20_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G14390.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-65 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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