PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR05G14290.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Dof

Protein Properties

Length: 278aa MW: 29279.6 Da PI: 6.1473

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR05G14290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.2	7.8e-38	31	85	6	60
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ LPERR05G14290.1 31 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 85 68***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	21	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	31	85	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.3E-32	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MLSYAAAAAA AGRRAVVVDH RRYRPNVEVA PNCPRCDSPN TKFCYYNNYS LSQPRYFCKG 60 CRRYWTKGGS LRNVPVGGGC RKNRRGKPVR AVVAAADDHA AAASSFSHRF HGPVRPDMLL 120 EGMAGNDPAA AGLGQAPVPD EKPAAAADGS AIDLALLYAK FLNHQPPADQ SVDTSSGSCD 180 QTSPAAAQAT ATPAIGELSF GVDESCYAGY STSLGLATDG GDLILPSTLD QQHSKFEPFD 240 SISLPEDALS LHEIISGDDD VWSSALGCQG LESALCRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR05G14290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	8e-99	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006654467.1	1e-137	PREDICTED: uncharacterized protein LOC102700144
TrEMBL	A0A0D9WH07	0.0	A0A0D9WH07_9ORYZ; Uncharacterized protein
STRING	LPERR05G14290.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	5e-35	Dof family protein