PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G11950.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 267aa    MW: 29126.3 Da    PI: 11.139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G11950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-082651328
                     SS-HHHHHHHHHHHHHTTTT-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIa 28
                     +WT+eEd+ lv +++ +G+++W++++
  LPERR05G11950.1 26 PWTPEEDLMLVVYIQDHGPRNWRAVP 51
                     8**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-1123133IPR001005SANT/Myb domain
SuperFamilySSF466892.23E-62352IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-82553IPR009057Homeodomain-like
PfamPF002492.3E-62652IPR001005SANT/Myb domain
CDDcd001672.47E-42650No hitNo description
PROSITE profilePS500906.82926131IPR017877Myb-like domain
SuperFamilySSF466892.24E-6103137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-11107138IPR009057Homeodomain-like
CDDcd001670.00112108131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVGNCGGGDG WRQQNLGGAE VKKGCPWTPE EDLMLVVYIQ DHGPRNWRAV PTNTARAAGS  60
GGQSNSGRGS SGGISPTRRR SSSFTSRPSS ATVLRLFDDD GFWGIIWWAA IASYLMERTD  120
NDIKNYWNTH LKKKLKRMTD ASTWRRRRPG RRRPRGRGSG ISRRTSRPRS PRRPLAQHLL  180
AAAAAAAGGA VVGDVRVQRR EAWRWEGVGG GDAVQVDVVG VGVVRRGDAD AGRLVDGDEE  240
DEGRGVFLGC HYRASQSDSQ SDRGEDA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131147KKKLKRMTDASTWRRRR
2143148WRRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G11950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WG300.0A0A0D9WG30_9ORYZ; Uncharacterized protein
STRINGLPERR05G11950.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-24myb domain protein 94