PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G05660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRAS | ||||||||
Protein Properties | Length: 155aa MW: 17209.7 Da PI: 8.7582 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 78.8 | 1e-24 | 18 | 154 | 193 | 329 |
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsles.....erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.. 279 L++ p Ea+a+n+v+qlhrll +++++ ++ +vL+l+ sl+Pk eadhn+ s+lerf ++l yy+a+fdslea +r+s LPERR05G05660.1 18 VLHTIPSEAIAINVVIQLHRLLVNQGTTMAvsssvPIVDVLDLITSLNPK-------EADHNKLSLLERFNNSLFYYAAMFDSLEAA-SRTSea 103 588999****************665554433344567789*********7.......***************************888.566634 PP GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 + ++ +r++ + + n v++eg++ ++rh+ + +W er+++aG+++vp LPERR05G05660.1 104 mSPATRSSRHYCRGRSANTVSHEGSSCVQRHKLMTRWMERIQRAGLTQVPH 154 566788899999999*********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 14.195 | 1 | 155 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.5E-22 | 18 | 154 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MSFVTWGFPS PSLQGLAVLH TIPSEAIAIN VVIQLHRLLV NQGTTMAVSS SVPIVDVLDL 60 ITSLNPKEAD HNKLSLLERF NNSLFYYAAM FDSLEAASRT SEAMSPATRS SRHYCRGRSA 120 NTVSHEGSSC VQRHKLMTRW MERIQRAGLT QVPHD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G05660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638486.1 | 4e-41 | DELLA protein SLR1 | ||||
TrEMBL | A0A0D9WDS9 | 1e-111 | A0A0D9WDS9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G05660.1 | 1e-112 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-17 | RGA-like 2 |