PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G05220.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 372aa    MW: 39446.9 Da    PI: 6.8336
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G05220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-08108129426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      + C++f++ G Ck+Gd C +aHg
  LPERR05G05220.1 108 AACPDFRK-GGCKRGDACEYAHG 129
                      78******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.713104131IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-6104130IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6108129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5110131IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343139163IPR000571Zinc finger, CCCH-type
SMARTSM0035612139162IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGEGAHAPPW QHVSPVSGVD GGEVAPYHLL DALRHYLPSN DSSSVAAAEE EDEAAAVDAY  60
ACDEFRMYEF KVRRCARGRS HDWTECPFAH PGEKARRRDP RRYSYSGAAC PDFRKGGCKR  120
GDACEYAHGV FECWLHPARY RTQPCKDGTA CRRRVCFFAH TPEQLRVLPA AANGSPRSPA  180
AAAESYDGSP LRRQAFESYL AAKSAMSSSP TSTLASPPRS PEFSPPLSPD AAGAAALRHG  240
WVGTSPVSDV LVSLRQLRLG SSSPRSPAAS TAAAFLYGSP KSPAAAALYG SLPSTPTAVT  300
VTTASGATVT VEPLDLGLID EEQQPVERVE SGRALREKVF ERLSKEATVT VSGDGGGGGA  360
GPDVGWVSDL IN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G05220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640763.11e-169zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N41e-170C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0D9WDM60.0A0A0D9WDM6_9ORYZ; Uncharacterized protein
STRINGLPERR05G05220.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-78C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]