PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G04920.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 196aa    MW: 21477.7 Da    PI: 5.7409
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G04920.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44.1e-3099157159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +dDg++WrKYG+K vk+s++pr+YYrC+s+gC+vkk+ver++ed ++v++tY g Hnh 
  LPERR05G04920.2  99 MDDGFKWRKYGKKAVKNSPNPRNYYRCSSEGCNVKKRVERDREDHRYVITTYDGVHNHA 157
                      59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3287159IPR003657WRKY domain
SuperFamilySSF1182901.57E-2791159IPR003657WRKY domain
PROSITE profilePS5081131.49194159IPR003657WRKY domain
SMARTSM007744.4E-3499158IPR003657WRKY domain
PfamPF031062.2E-23100156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MAASIGLSPE AFFSSYSYSS SSSPFMASYV PEVPVATIGT DFSNELDFDY SLPAPALAGT  60
VSDEYPDNES IMMRCESEEK KARVNGRIGF RTRSEVEIMD DGFKWRKYGK KAVKNSPNPR  120
NYYRCSSEGC NVKKRVERDR EDHRYVITTY DGVHNHASPG ATAAALQYYA AGDYCSPPNS  180
SAGSPSAAYS AGSLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2585159377Probable WRKY transcription factor 4
2lex_A4e-2585159377Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G04920.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4062161e-118CU406216.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D08, full insert sequence.
GenBankCU4062181e-118CU406218.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654120.17e-92PREDICTED: probable WRKY transcription factor 51
TrEMBLA0A0D9WDI51e-142A0A0D9WDI5_9ORYZ; Uncharacterized protein
STRINGLPERR05G04920.11e-114(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.15e-39WRKY DNA-binding protein 50