PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR05G04040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 249aa MW: 25895.2 Da PI: 8.369 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.1 | 4e-40 | 66 | 166 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l++el LPERR05G04040.1 66 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILNLQQQVHALESEL 159 7********************************************************************************************* PP DUF260 95 allkeel 101 a++++++ LPERR05G04040.1 160 AAVRAQI 166 **99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.444 | 65 | 166 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.3E-40 | 66 | 163 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MSTASDWQDH YEVGRKIIKR ESALSAADAA AASADDGRMM ARRSCSTPAA AAGAGPGSAA 60 VNTITPCAAC KLLRRRCAQE CPFSPYFSPL EPHKFASVHK VFGASNVSKM LLEVHESQRG 120 DAANSLVYEA NLRLRDPVYG CMGAILNLQQ QVHALESELA AVRAQIVSHK YRSSPATATT 180 VLPSSHASQL LAGRLPVAAA GTMGVTTATL PAVASASSST TTAAVYAAAA ASSSTDYSSI 240 TNENVPYFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-40 | 51 | 169 | 1 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-40 | 51 | 169 | 1 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR05G04040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881485.1 | 1e-111 | LOB domain-containing protein 15 isoform X1 | ||||
Swissprot | Q9AT61 | 4e-67 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A0D9WD76 | 0.0 | A0A0D9WD76_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G04040.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 4e-65 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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