![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR05G02400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 427aa MW: 47212.7 Da PI: 6.6935 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl LPERR05G02400.1 14 KGLWSPEEDEKLMNHITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2.1e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ LPERR05G02400.1 67 RGAFSQDEEDLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 89********************.*********.*********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.6 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.62E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.84E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.024 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.10E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 427 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQDEEDLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CIKKKLRQKG 120 IDPNTHKPLT EADRRGAAPT ISTERTSGSS DVNPSSASAL GNLSHLLSET AQSSMLLPVY 180 DKNHPETPNL ARPKVPPKEL FLDQLTAGHE SPSSCRSSGP ALYFPFQQPL GYSRECGSGD 240 GANMNSLWFN QNDFNCSTIS TVMPPVSPSA LSTSMGLNVP PENPRHGGTG IGNTTFYWDG 300 SNPSSSGSTG SSGSNSMGFE PQSTTSILEN SVFPWTDIGQ EKDTRVHLVE ELKWPDLLHG 360 TFAESTTAMQ NQSQSLYDDV IKAESQFSME GICASWFQNQ QPQQQLQAAS DMYDKDLQRL 420 PLSFEHI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR05G02400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ495784 | 0.0 | AJ495784.1 Oryza sativa Japonica Group mRNA for MYB16 protein. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881490.1 | 0.0 | transcription factor MYB61 | ||||
TrEMBL | A0A0D9WCJ4 | 0.0 | A0A0D9WCJ4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR05G02400.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2310 | 37 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09540.1 | 8e-90 | myb domain protein 61 |