PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G01780.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 265aa    MW: 29901.9 Da    PI: 5.2912
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G01780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.22.8e-2054121168
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                      +W++ e+ a +++r ++++++ ++k++k+lWe+ s+++++ gf+r+p qCk+kw+nl +r+k +++ +
  LPERR05G01780.1  54 QWSHAETAAFLAIRADLDDSFLSTKRNKALWESASARLHSLGFSRTPDQCKSKWKNLVTRFKGTAAAA 121
                      7*************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.22E-2253117No hitNo description
PfamPF138371.1E-1554120No hitNo description
PROSITE profilePS500907.17855111IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDPFHHLNSS FSNPYHPLLA ASPPHHFDPL LDPPPPPPLP GGGEASIERE RLPQWSHAET  60
AAFLAIRADL DDSFLSTKRN KALWESASAR LHSLGFSRTP DQCKSKWKNL VTRFKGTAAA  120
ATPAVDPTEQ MMGTRGSSTS SSSFPFHDEL RRIFESRAER ARALDQMRKK VKGKDQVDDE  180
DDQEDDDDDG DQNQHQVDED DDAAAADTAA RAKKRRRKAA ERRNPTTAAE GEVEAMLREF  240
MRRQVEMEER WMEAAEAREA ERRDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212217KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G01780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637590.13e-87trihelix transcription factor GT-3b
RefseqXP_015637591.13e-87trihelix transcription factor GT-3b
TrEMBLA0A0D9WCA90.0A0A0D9WCA9_9ORYZ; Uncharacterized protein
STRINGLPERR05G01780.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.11e-26Trihelix family protein