PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G24090.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WOX
Protein Properties Length: 280aa    MW: 29930.3 Da    PI: 7.6655
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G24090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.7e-192989357
                     --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     +R+++t+eq+++L el++    r p+ e+++++A+ l    +++ ++V++WFqN++a+e++
  LPERR04G24090.1 29 TRWAPTTEQIRILRELYYGcgIRSPNSEQIQRIAAMLrqhgRIEGKNVFYWFQNHKARERQ 89
                     7*****************7568*************************************97 PP
2Wus_type_Homeobox111.83.6e-362891365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        tRW+Pt+eQi+iL+ely+ +G+r+Pn+e+iqri+a+L+++G+ie+kNVfyWFQN+kaRerqk+
    LPERR04G24090.1 28 GTRWAPTTEQIRILRELYYgCGIRSPNSEQIQRIAAMLRQHGRIEGKNVFYWFQNHKARERQKK 91
                       69****************999*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.2032490IPR001356Homeobox domain
SuperFamilySSF466899.84E-122493IPR009057Homeodomain-like
SMARTSM003896.5E-62694IPR001356Homeobox domain
CDDcd000864.85E-62991No hitNo description
PfamPF000462.3E-162989IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-73089IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDHMQQQRQV GGGEVGGVTT SAVCRSSGTR WAPTTEQIRI LRELYYGCGI RSPNSEQIQR  60
IAAMLRQHGR IEGKNVFYWF QNHKARERQK KRLTNLDVTN NAADHHHHLA VLSLSPTGAT  120
SPSSPAAGFY VGNGGGGGGG GVSAVVQTEQ AAGVNCMDFT AMATERTFLQ DYMGVNAGGA  180
AMVQTPWTTP TPTIREPETL PLFPVVVGGG EERGGNGNFP CIFQPWGSSA ATTTTTIGVQ  240
QHQLLQQHNF YSNSNHLQPS QDGAAGTSLE LTLSYPAGSM
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G24090.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6111172e-90KC611117.1 Oryza punctata WUS (WUS) gene, partial cds.
GenBankKC6111182e-90KC611118.1 Oryza officinalis WUS (WUS) gene, partial cds.
GenBankKC6111192e-90KC611119.1 Oryza australiensis WUS (WUS) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635371.12e-96WUSCHEL-related homeobox 1B
SwissprotQ7XM132e-97WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLA0A0D9WAS80.0A0A0D9WAS8_9ORYZ; Uncharacterized protein
STRINGLPERR04G24090.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-34WOX family protein
Publications ? help Back to Top
  1. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  2. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  3. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]