PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G23440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | AP2 | ||||||||
Protein Properties | Length: 495aa MW: 53266.8 Da PI: 6.1034 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.8 | 1e-11 | 148 | 204 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g LPERR04G23440.1 148 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 204 57*******************5444.2455536655.779999**************98 PP | |||||||
2 | AP2 | 52.2 | 1.5e-16 | 247 | 298 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt+eeAa+a++ a+ k++g LPERR04G23440.1 247 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTEEEAAEAYDIAAIKFRG 298 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.93E-19 | 148 | 214 | No hit | No description |
Pfam | PF00847 | 3.5E-9 | 148 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-15 | 148 | 213 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-12 | 149 | 213 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.57 | 149 | 212 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-22 | 149 | 218 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-6 | 150 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.77E-24 | 247 | 307 | No hit | No description |
Pfam | PF00847 | 3.3E-11 | 247 | 298 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-17 | 247 | 307 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-17 | 248 | 306 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-32 | 248 | 312 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 248 | 306 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-6 | 288 | 308 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MDMDTTSHHY PWLNFSLSHH CDMEEEERGA AAELAAIAGA APPPKLEDFL GGGGGVQVSG 60 AAPAQTAAAA AAAEMYESEL KFIAAGFLSG GGGGGAAVPS PSPSLAQAGI EQVDETKQLV 120 ASLPAQAAVA PAPELKTKAV DSFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG 180 RQGGYDKEEK AARAYDLAAL KYWGPSTTTN FPVAEYEKEL EEMKHMTRQE FVASLRRKSS 240 GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFG TEEEAAEAYD IAAIKFRGLN 300 AVTNFEIGRY NVESIINSNL PIGSMAGNRN TKALELAPSS SADAMPTVEA NHAGVAPPST 360 LAFTALPMKY DQADYLSYLA LQHHQQGNLQ GLGFGLYSSG VNLDFASVNG NGAMPHCYSN 420 GSLHEQQQHH HQQEQEQEQD QQDHQSQSSN SCSSIPFATP IAFSSGSYES SMTAAGSFGY 480 YPNVAAFQTP IFGME |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G23440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY062179 | 0.0 | AY062179.1 Oryza sativa aintegumenta-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633701.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL5 isoform X2 | ||||
Swissprot | Q6PQQ3 | 1e-133 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A0D9WAH3 | 0.0 | A0A0D9WAH3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G23440.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 1e-118 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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