PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G21110.5
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 294aa    MW: 31979.1 Da    PI: 6.7991
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G21110.5genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.2e-50111541128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee...v.ikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratksgyWka 85 
                      lppGfrFhP+deelv++yL +k++g          +   v + +vd++k+ePw+Lp +++ +++ ewyfFs +d+kyatg+r+nrat+sgyWka
  LPERR04G21110.5  11 LPPGFRFHPRDEELVMDYLYPKLTGAGagagE---QyggVaMVDVDLNKCEPWELPDAARVGTRvEWYFFSLHDRKYATGQRTNRATASGYWKA 101
                      79**********************99955443...1445459**************655566666***************************** PP

              NAM  86 tgkdkevlsk......kgel......vglkktLvfykgrapkgektdWvmheyrl 128
                      tgkd++v+++      +  +      vg++ktLvfy+grap+g+kt+Wvmhe+r+
  LPERR04G21110.5 102 TGKDRAVFRRrhgvsgE--AaaaaavVGMRKTLVFYQGRAPRGSKTEWVMHEFRV 154
                      *********96665540..1566666***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-563182IPR003441NAC domain
PROSITE profilePS5100553.85911182IPR003441NAC domain
PfamPF023654.0E-2612154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSLISMMEAN LPPGFRFHPR DEELVMDYLY PKLTGAGAGA GEQYGGVAMV DVDLNKCEPW  60
ELPDAARVGT RVEWYFFSLH DRKYATGQRT NRATASGYWK ATGKDRAVFR RRHGVSGEAA  120
AAAAVVGMRK TLVFYQGRAP RGSKTEWVMH EFRVDGPAVA DHPSSSPLLL KEDWVLCRVF  180
YKSRTATPRP VSGEAAGVSL SSELSLPPPP PVAPAVVDAY LAVDRAPASD IVAGGYYRPP  240
PELTDFRDLL GNMVNGGGGA KAEGFHLGWS EEEAAGFVQQ QQQSAMASQA WNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-44818312169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G21110.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376681e-115CT837668.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA124G03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691750.11e-126PREDICTED: NAC domain-containing protein 21/22-like
TrEMBLA0A0D9W9K40.0A0A0D9W9K4_9ORYZ; Uncharacterized protein
STRINGLPERR04G21110.50.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.13e-68NAC family protein