PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G19850.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 276aa    MW: 32207 Da    PI: 7.5624
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G19850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.11.3e-2419105186
         trihelix   1 rWtkqevlaLiearremeerlrr.....gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W  qe+++Li+ar eme++  +     ++++ +lWe+vs+++rerg++r++ qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  LPERR04G19850.1  19 QWGAQETRELIAARGEMEREAAApaaagRRSARTLWEAVSSRLRERGYRRTADQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 105
                      7*******************997444334699************************************99999974....678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.38E-171888No hitNo description
PfamPF138378.1E-2219106No hitNo description
PROSITE profilePS500907.2132081IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEAGGYGGGE GGRDERVPQW GAQETRELIA ARGEMEREAA APAAAGRRSA RTLWEAVSSR  60
LRERGYRRTA DQCKCKWKNL VNRYKGKETS DPENGRQCPF FDELHAVFTE RARTMQQQLL  120
ESESGPSVQK KLKRPSGNLS SEDSDDKEDD GEESGDEKPI RSKKRKSSDK RQQSQRMADK  180
FGTGISSMHE LLQDFLAQQQ HMDIQWHKMM ERRSQERLVF EQEWQQSMQK LEQERLMLER  240
TMMEREEQRR MREEARAEKR DALLTTLLNK LLHEDI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G19850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1057200.0AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence.
GenBankAL6066380.0AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552280.0CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163375.11e-132trihelix transcription factor GT-3a-like
TrEMBLA0A0D9W9060.0A0A0D9W906_9ORYZ; Uncharacterized protein
STRINGLPERR04G19850.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-20Trihelix family protein