PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G19690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 261aa MW: 29248.3 Da PI: 9.5054 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.6 | 6.9e-34 | 7 | 61 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl LPERR04G19690.1 7 KPRLRWTPELHERFVDAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 61 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.996 | 4 | 64 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-33 | 4 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.76E-17 | 6 | 63 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 7 | 62 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.0E-10 | 9 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.8E-21 | 104 | 149 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MATREPKPRL RWTPELHERF VDAVTKLGGP DKATPKSVLR LMGMKGLTLY HLKSHLQKYR 60 LGRQNKKTAG LELADSGFTA EGTSFSTGAP RRDPAEGNNT GERQLADALR YQVEVQRKLH 120 EQLEVQKKLQ MRIEAQARYL EEILEKAQKN ISLDANGSAN LASNTPQITD INLALSGFMD 180 NATQLHEENN ELVKAISDDK LKVNLGFQLY HVGSQESKDV KCTPKTEDLL LLGLNIRGGY 240 ELPSRGMKGC ELDLKINQQT R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-22 | 7 | 63 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-22 | 7 | 63 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-22 | 7 | 63 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-22 | 7 | 63 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-22 | 7 | 63 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-22 | 7 | 63 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-22 | 7 | 63 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-22 | 7 | 63 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G19690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK106400 | 1e-174 | AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635409.1 | 1e-159 | myb family transcription factor PHL11 isoform X2 | ||||
TrEMBL | A0A0D9W8Y9 | 0.0 | A0A0D9W8Y9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G19690.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 2e-61 | G2-like family protein |