PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G18220.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 291aa    MW: 32221 Da    PI: 6.5882
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G18220.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.88e-08828425
                     ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                     ++C +f+  G C+yGd+C+F H
  LPERR04G18220.3  8 KPCVYFSS-GDCRYGDKCRFLH 28
                     78999998.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.549431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5529IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5630IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5828IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-6829IPR000571Zinc finger, CCCH-type
SMARTSM0032033767IPR001680WD40 repeat
PfamPF004000.0154367IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.7E-2150285IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509786.05E-2451284IPR017986WD40-repeat-containing domain
PROSITE profilePS500829.5065376IPR001680WD40 repeat
SMARTSM003200.82141193IPR001680WD40 repeat
PfamPF004000.15147192IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSDARMRKPC VYFSSGDCRY GDKCRFLHAD SISINKSFSL RSTLHGHQME RDMVFSSSED  60
GTVRVWDYLT GQGPSTLGWR CILSEGPMLF VGIPGAVKIW NTQTGVEMNL IHALAFGNGM  120
LFAAIQDGKI LAWRYCAEKN SFDLAASLVG HQGPVVSLSV GTMRLYSGAI MSLLCWEQFL  180
LSCSLDQTIK VWTVTETGSL AVTYTHNEDH GALALAGMQD AQLNPIFLCS TNDKAIHLYE  240
LPSFIERDKL SFKVEIRAMK NGPGRLIFTG DEIGELMVWK CITEQNHGAS N
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G18220.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032544e-73AK103254.1 Oryza sativa Japonica Group cDNA clone:J033123O13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647681.11e-105PREDICTED: zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP51e-105C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0D9W8E80.0A0A0D9W8E8_9ORYZ; Uncharacterized protein
STRINGLPERR04G18220.40.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.12e-92zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]