PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G16380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | DBB | ||||||||
Protein Properties | Length: 252aa MW: 26734.7 Da PI: 5.345 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.2 | 5.1e-06 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ + ++ fC ++ lC+ C H+ H+ LPERR04G16380.1 4 QCDVCAADAASVFCCADEAALCDACDRRVHSAnklagkHR 43 7******99******************9996566777776 PP | |||||||
2 | zf-B_box | 27.3 | 7.5e-09 | 59 | 100 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++++C+ +++k+ lfC++++ lC++C ++ H H LPERR04G16380.1 59 KPPICDICQDKRGFLFCKEDRAILCRECDVAVHTTseltrrH 100 789****************************99544555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.57 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.8E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.06E-6 | 3 | 47 | No hit | No description |
SuperFamily | SSF57845 | 5.95E-5 | 53 | 93 | No hit | No description |
SMART | SM00336 | 3.6E-13 | 58 | 105 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.21 | 58 | 105 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.5E-7 | 59 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.59E-8 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MKVQCDVCAA DAASVFCCAD EAALCDACDR RVHSANKLAG KHRRFSLLHP SPSSTSSSKP 60 PICDICQDKR GFLFCKEDRA ILCRECDVAV HTTSELTRRH SRFLLTGVRL SSAPMDSPAL 120 SGEEEQAEED SCSPSSGAGA NTAAASASDG SSISEYLTKT LPGWHVEDFL VDEATAAAAS 180 SSSSDGLYQG GLAQIGGVPD GYSAWAGREQ LLSGVAVAAD ERASRERWVP QMHAEWGAGS 240 KRPRASTPCL YW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G16380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061333 | 0.0 | AK061333.1 Oryza sativa Japonica Group cDNA clone:006-303-A11, full insert sequence. | |||
GenBank | CT830169 | 0.0 | CT830169.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102E21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634023.1 | 1e-151 | B-box zinc finger protein 20 isoform X2 | ||||
Swissprot | Q9LQZ7 | 2e-54 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A0D9W7P4 | 0.0 | A0A0D9W7P4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G16380.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2392 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 9e-33 | salt tolerance homolog2 |