PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G16190.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

YABBY

Protein Properties

Length: 262aa MW: 27802.4 Da PI: 7.7843

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G16190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	208.2	3e-64	25	214	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.....qllaaeshldeslkee...................lleel 75 eq+Cyv+CnfC+tilav vP +slfk+vtvrCGhC++llsvnl+ ++l+ + l + ++e+ LPERR04G16190.1 25 EQEQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlpaaaNQLPFGQALLS----PtsphglldevpsfqapqslMTEQA 114 579****************************************98873333323333333333....2455699999999987765433333 PP YABBY 76 kveeenlksnvekeesastsvssekl......senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa 161 + ++++s + +s ++++++++ s +++ + p+ + ++r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaaknWa LPERR04G16190.1 115 SPNVSSITSSN---SSCANNTPATSMasaankSAQREPQQPKSAQsaTNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWA 205 33333333322...22223333333334443344444455555554589***************************************** PP YABBY 162 hfPkihfgl 170 hfP+ihfgl LPERR04G16190.1 206 HFPHIHFGL 214 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.3E-70	25	214	IPR006780	YABBY protein
SuperFamily	SSF47095	2.75E-7	157	207	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.6E-4	165	206	IPR009071	High mobility group box domain
CDD	cd00084	7.97E-5	168	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0010154	Biological Process	fruit development
GO:0010158	Biological Process	abaxial cell fate specification
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MMSSAAETFS LDHLAQHQPP PPLAEQEQLC YVHCNFCDTI LAVGVPCSSL FKTVTVRCGH 60 CANLLSVNLR GLLLPAAANQ LPFGQALLSP TSPHGLLDEV PSFQAPQSLM TEQASPNVSS 120 ITSSNSSCAN NTPATSMASA ANKSAQREPQ QPKSAQSATN RTSEKRQRVP SAYNRFIKDE 180 IQRIKASNPD ITHREAFSAA AKNWAHFPHI HFGLMPDQGL KKAGIQSQDG PGECMLFKDG 240 LYAAAAAAAA ATAASSMGVT PF

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G16190.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274017	0.0	AB274017.1 Oryza sativa Japonica Group OsYABBY5 mRNA for OsYABBY5 protein, complete cds.
GenBank	AK070205	0.0	AK070205.1 Oryza sativa Japonica Group cDNA clone:J023042I23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634596.1	1e-158	protein YABBY 5
Swissprot	Q01JG2	1e-159	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-159	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A0D9W7L7	0.0	A0A0D9W7L7_9ORYZ; Uncharacterized protein
STRING	LPERR04G16190.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-55	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]