PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G15600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TCP | ||||||||
Protein Properties | Length: 204aa MW: 21637.6 Da PI: 9.8202 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.6 | 1.9e-33 | 56 | 146 | 9 | 89 |
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.sec.eaesssssasnsssg........k 89 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++ +a +c +a ss+ + + + g LPERR04G15600.1 56 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTAPAvFSCsSAPSSVLGKRHRQDGdgfdepppP 146 89*******************************************************9988855555555555555544444445555551 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.009 | 55 | 109 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.6E-29 | 55 | 131 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MASRDLATFQ VYRPMAMPTP SAPLPSQQIT MPFAAAPPAD AAVLPAPPRK ACGGGKDRHS 60 KVNGRGRRVR MPIVCAARVF QLTRELGLKS DGQTIEWLLR QAEPSILAAT GSGTAPAVFS 120 CSSAPSSVLG KRHRQDGDGF DEPPPPSLSF WEALHQPPRP VLSAWGISQE AQAYASSVAH 180 VQHLNLLSAL SGGSAATRRI AEEE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G15600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064708 | 1e-115 | AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence. | |||
GenBank | AL663019 | 1e-115 | AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence. | |||
GenBank | AP014960 | 1e-115 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-115 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855230 | 1e-115 | CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635777.1 | 7e-87 | transcription factor TCP21 | ||||
Swissprot | Q9FMX2 | 9e-37 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0D9W7D0 | 1e-145 | A0A0D9W7D0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G15600.1 | 1e-146 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 5e-38 | TCP family protein |