PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G10110.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 136aa    MW: 15580.3 Da    PI: 4.3313
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G10110.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM561.4e-17785188
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
                     lppGf+F P+deel+v++L++k++  +++  ++++++ +++++Pw+L+ k+ ++ ++wyfFs++          +r+  +g Wk+   
  LPERR04G10110.2  7 LPPGFHFFPSDEELIVHFLRRKASLLPCRP-DIVPTLILNRYDPWELNGKALQSGNQWYFFSNEIP--------TRSSPNGHWKSIAA 85
                     79*************************999.89**************976667789*****99754........34444455554443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-253100IPR003441NAC domain
PROSITE profilePS5100521.1637136IPR003441NAC domain
PfamPF023652.1E-11887IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MAGASNLPPG FHFFPSDEEL IVHFLRRKAS LLPCRPDIVP TLILNRYDPW ELNGKALQSG  60
NQWYFFSNEI PTRSSPNGHW KSIAADETES NNWVVCRVFE SSYDSQVSFH EEGMELSCLD  120
EVFLSLDDYD EVSFAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-1668714103Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G10110.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2435857e-76AK243585.1 Oryza sativa Japonica Group cDNA, clone: J100082O14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823282.14e-69NAC domain-containing protein 104-like isoform X2
SwissprotQ8GWK61e-40NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0D9W5748e-97A0A0D9W574_9ORYZ; Uncharacterized protein
STRINGTraes_2BL_F4302657F.28e-65(Triticum aestivum)
STRINGTraes_2DL_61C443C56.14e-65(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.14e-43xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]