PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G07290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 111aa MW: 12763.5 Da PI: 10.1549 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.9 | 3e-14 | 12 | 58 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rie+ +r + f kR++g+ KKAeEL vLCda v +++ ++ +l+ + LPERR04G07290.1 12 RIEDRLRRGICFRKRLAGMEKKAEELAVLCDAHVGFLVI-EDHRLHHF 58 8*********************************99987.56666666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-11 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.68 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-10 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-16 | 6 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.6E-16 | 12 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-10 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-10 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MGRRSGRVVL RRIEDRLRRG ICFRKRLAGM EKKAEELAVL CDAHVGFLVI EDHRLHHFAA 60 PGTIESIVER YKNFLEERKG VHGRHILEKS KSEDFQVPKE TIDLGLNNGG X |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G07290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111796 | 5e-67 | AK111796.1 Oryza sativa Japonica Group cDNA clone:J023103N18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637115.1 | 9e-40 | truncated transcription factor CAULIFLOWER D-like isoform X1 | ||||
Refseq | XP_015637118.1 | 8e-40 | truncated transcription factor CAULIFLOWER D-like isoform X2 | ||||
TrEMBL | A0A0D9W478 | 9e-73 | A0A0D9W478_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI04G08460.1 | 5e-42 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-17 | AGAMOUS-like 8 |