PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR04G04290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 331aa MW: 34826.6 Da PI: 10.2451 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99 | 3e-31 | 252 | 310 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs+fpr+YY+C++ gCp++k+ver+ dp+++++tYegeH+h+ LPERR04G04290.1 252 ADEYSWRKYGQKPIKGSPFPRGYYKCSTLrGCPARKHVERDPGDPSMLIVTYEGEHRHN 310 69************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.4E-20 | 200 | 249 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-32 | 239 | 310 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 246 | 312 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-26 | 249 | 311 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-38 | 251 | 311 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-26 | 253 | 309 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MITMDLMSGY GRVDEQVAIQ EAAAAGLRGM EHLILQLSQT GTSERLPATE KKQQQEVDCT 60 EITDMTVSKF KKVISMLNRT GHARFRRGPV VAQSSGPALS EPAPATARSS PAAVAVLRPM 120 TLDFTKAAAA AAAAAGYGKD AGFSVLGISA ASSSFISSVT GDGSVSNGRG GGGSSSLMFH 180 PPPPATSCGK PPLSASAGHK RKCHDHAHSE NVAGGKYGST GGRCHCSKRR KHRVKRTIRV 240 PAISSKVADI PADEYSWRKY GQKPIKGSPF PRGYYKCSTL RGCPARKHVE RDPGDPSMLI 300 VTYEGEHRHN PAAGVQDTPS PAPATALPLL T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-21 | 239 | 314 | 2 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR04G04290.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100954 | 1e-150 | AK100954.1 Oryza sativa Japonica Group cDNA clone:J023139N16, full insert sequence. | |||
GenBank | AK121494 | 1e-150 | AK121494.1 Oryza sativa Japonica Group cDNA clone:J033000L17, full insert sequence. | |||
GenBank | HQ858832 | 1e-150 | HQ858832.1 Oryza sativa Japonica Group isolate UT1331 WRKY transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015633572.1 | 1e-171 | WRKY transcription factor WRKY51 | ||||
Swissprot | Q0JEE2 | 1e-172 | WRK51_ORYSJ; WRKY transcription factor WRKY51 | ||||
TrEMBL | A0A0D9W376 | 0.0 | A0A0D9W376_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G04290.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP617 | 38 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31550.1 | 4e-94 | WRKY DNA-binding protein 11 |