PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G04010.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 437aa    MW: 48579.3 Da    PI: 8.7904
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G04010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-19303398395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v++k+ ae+h   ++++e+++l++ed +   +W++k+++  ++ks++yvl+  + +Fvk++gL++gD+++++  ++++++
  LPERR04G04010.1 303 KELTNSDVGNIGRIVISKRDAEAHlpALDQREGQMLKMEDfKFEATWNFKYRFwpNNKSRMYVLE-STGGFVKQHGLQTGDIFIIYK-SSESGK 394
                      89************************88899999******7778*******9989999999**99.9*******************3.337777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      + v+
  LPERR04G04010.1 395 YIVR 398
                      7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.49E-22300398No hitNo description
SuperFamilySSF1019362.62E-18300395IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-25300398IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.938301403IPR003340B3 DNA binding domain
SMARTSM010194.8E-12301400IPR003340B3 DNA binding domain
PfamPF023624.2E-15303397IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MADARGSSSS GGGGVGRGQA GNGDFTADHS QHNNRYHGIL GAVPPPSFGR QNVMHHQYLT  60
GMIHNPSPAM PLPVAPVPYM PQQYTMVPTP TMLPPQHHHG QSQISQGNFQ DWVPSNNGAV  120
QHVPSASQDL RPMYNGPAFM SFGQTAAASN VYYQNLNPCT IDAWTSSNMP RNQVYSGFHP  180
DAIQDHHAPP FHSNNHDTHR GFHTHTGFRV DQALVPASSP FPLVSSSSHN FSSAKISNEP  240
TYSKKAKKSD VKDPPIVFRR NDMKSEKNDE LDQTLASEPP SINQNGALNV RFNCREYCAI  300
LRKELTNSDV GNIGRIVISK RDAEAHLPAL DQREGQMLKM EDFKFEATWN FKYRFWPNNK  360
SRMYVLESTG GFVKQHGLQT GDIFIIYKSS ESGKYIVRGE KAIKPNAVRP VVDCCCKNDL  420
NNNEECRFTV SLQTKKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-333004024106B3 domain-containing transcription factor FUS3
6j9b_D7e-333004024106B3 domain-containing transcription factor FUS3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G04010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880492.10.0putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC40.0Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A0D9W3300.0A0A0D9W330_9ORYZ; Uncharacterized protein
STRINGLPERR04G04010.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.12e-37B3 family protein